RNA id: XM_043255712.1


Basic Information

Item Value
RNA id XM_043255712.1
length 3655
RNA type mRNA
GC content 0.51
exon number 3
gene id pwwp2b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22041455 ~ 22051686 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGTGATTCAGTGCTTTAATTCATCTTAATCATTCTAATGAAGCACATCTGAAGGGTTTTGGACTCGTCTTTTAAGTTTAAACAGACCACCGTACACTAAATCTATTATTATGAGAACACTTCATTTGCTTATACAGAGAGAGGgcatgtgttttcatttaattgtgtgATTAATAATTCCACAGCATTtgatatataaagatttttctGGCTACAACAAACTAAatcatgcacaaaaacacactcaatGCAGGAGTCtgatttttgtgaataaaaggCATGTTCCTTCATGAAGACTGAACTGGACCTTACACAAACAGGAGAGTTCCTCATGAGATACTGCTGGTTATTATCACAGGAGCATGCTTCGTACTGTTGGGTAAAACCTAGTAGTTTGAAGGATAGCGACGAAtctttaaaatgactgaatttaAACAAAAGACCCTTAAAACTGTTAtctgtgtctctggagcacagtTCTATTCGTAGAAATACACAGCTTGAGGCACATGCATATAGTTTCCTAAACCATCAGGATATTAAGATCGTGCTGTCGGATTTCCTATATATTAGGGATATTCatctttaaaggagatttttttcTACCAGCATAGATTCTTTTCCAGCAGCTTTCAGGCGCCCTATGATCCTCAGTCTCGCTCCGTGACTCTGAATGCTCGTGAAAGAGCGATCACGAAACGAACGGGCGCGCGCTCTGACGGACTCGGAGCGTCTCCCGAGCTCGATGACGAGCTCGGCTGGTGATGTCACCGCGGACGGATCGTCGTAACGCGTCGGCGGAGCTGATGGCGTCACTGCGCGTCCCGAGCGCGCCGGCGGATCTCAGCAGCGGAGAGCGACGCGACCGTGGCTCCGGCGGCCGGGATCGAGCGACGCCCAGCCGGACACCGAGCGAGGAGACGATGGAGGCTGTAGCGGAGGAGCTGCGGGCCGGCTCCCGGATCCCGGTGACCGTCGAGCAGATCGTCAACGACACGCTGGTGGTGACGCTCACGTACCGGGAGAGGAGCTACACCGGCATCCTGCTGGACTGCGGCAGAAAGACTGGACTGTTTTGCCTTCCAGATGTTGTTGGAAAATCCGAAGAGAGCCTCATATTGAGACCGGACTGTGAAGTCTCGAGTGAAGAGGCTTCCTCTAAACCCGTTAGTCAGCCGACACAGCGACCAAAAGATGAAAACACGGAGCCTGAGATGGCAACTCCTCCCGCTCCCGTACCTATCCCGGTGCAACCGGGTCAGCCCACGTATCCGCCGTACTTCGAAGGAGCGCCGTTTCCGCAGCCCATGTGGGTCCGGCATACATACAACCAATGGGTACCGCAACCGCCGCCGCGTCCGATCAAGAGGAAGAAAAGACGAAGTCGAGAACCTGGAAGGATGACCATGAGCACGATCCGACTGAGACCTCGGCAGGTGCTGTGCgagaaatgcaaaaacacactaAATAGCGACGAGGAGAGCAAAGATGGACCAACGGTGCCCAAAACGTCCAGGAAGGAGAATGCTCCTCAAGACGAGGATGACTCTAAAGCGACTCCGGTCAAGAGGAAGGACGACGGAGACGGCATCAACAAAGAGTCAAAGAGACGAGAGGAATCGACGGCGTATGACGGCAAGCGCTTCCGGAAGGACAAGAAAGACGATGAGAAGTTTCCCAAAGGGGACGTCGTTCCCCACAGTCCCGTGATCAAGATCTCTTACAGCACTCCGCAAGGTAAAGGCGAAGTGATGAAGATCCCCTCGAGAGTCCACGGCTCGGTCAAACCCTTCTGCCCAAAGCAGCTTCTGCAGAACGGCCACAGAGAGCAGAACGCTTCCAAGGAACCCCAGAAAGTCGTGCAGACTCCTGTAGACGCCATACGAACGGGTCTCACCATTTCCATTCCCAAACTCAAGCTCCCAAAGCTGAACAATCCGGACGCCCCTTCGCCCAAGATACGCTTGAGATCCCGGGCCGACGGAGCGGAGCAGGTGTCCGTTTACGAGGCGGAATTGGTGGACGGCGTTCGGAGGAAGAGTCCGAGAGTTCCCAACTCTCAGTCAGAAGACGGTGCGGAGAAGAATTCGCTGGAGCTTTGGTCGGGCGAGGAAGTGGAACGGCACGGCGACTTGACTTTGCTCATCAACTTCCGGAAGAGAAAAGCAGACTCCTCCAGTCTCTCGGTGTGCAGCAGCGACAGTCTAGATGAGTCCAAGTCGTTCAGCTCTGACGGAACATCACCGGAAATCTGCGATCTCGCTCCGGGCGACGACATCTCCGTGTCGTCTTCCTCTCACGGGGAAAGCAAGACTGTTCCGCCTCTAACCGTGCGACTGCACACTCGCAGCATGACTAAATGCGTGACCGAGGAAGGTCATGCCGTAACGGTGGGCGACGTCGTCTGGGGGAAGATCCACGGATTCCCCTGGTGGCCTGCGAGGATACTCAGTATTAGCGGTATTCGTAGAGAAGAAGGCGAGGTCGATGCTCCCTGGCCCGAAGCTAAAGTCTCCTGGTTCGGATCTCCCACCACCTCCCAACTCTCGGTTGCCAAACTCTCGCCGTTCCGCGAGTTCTTCAGGTCACGCTTTAACCGCAAAAAGAAAGGGATGTACCGCCGTGCCATCATGGAGGCCGCCAAGGCGGTGGGACACATGGGTGCCGAAATCACATCTCTGCTGGCTCACTGCGAAACTTAGTGGACGAGGACAGACTGGACTGGCTGTCATTCAGGGTTTTGCAGGCGCTCCCAGGACGTGGCGGTCTCCCCGGACGGAGAGCGCCTTCATTTGCCACGGATATCATGAGGGAAGGTGCTTTATTTCCCCAAACACGCGGCTGGAGGAAGAAAAGGCGGCGCGCGGACCGCCTTCGAGGGCCGCGAGGAGAACGCGGGAACCTCGGAGCGAACTATTCCCCCGTTTGTCTCTCcgtctttcttttgtttgttttttaggaCGTACATTATATTAGAACAAGTAGCTCGACACTAAATCCGaatgtatttattcacaaaaaaaacacaaaaaaacaaaaaacaaacactcgACCGGTGACTGGCCTCCTGTAAGATCACACTGCTGCTGTTTCTTATGACTCTTACGTCCGTTTAGGATCCGAGCGGAACGACGAATATCCGTATTATTATACAGAACGACGAGTCTTACTGTGTCTGTTTCTTCAGATTATGAAAATGTGAACTTCCTTTTTGCATCATGTAGGTCTTACACCATGCAGTATGTCAGTTCGTCCGTCGCTTCACTTTCTCTGTCCTTTCCTAGAAATATATCTCTCGTATGTCTCTCCATCCTCTTCTTCACTCTTGATTATGTGatgttttgctttaattatttaatgtgtcACGATAAGAGAAGCACTTTATCCGTACCTTGGTGGCCTGCTGTGAACACTAGCTGGAGTTTGCAGACTCTCGGAGGAGCCAACCCATCGCTTttgaagtgattttttttttttttagtttttaatgatgCAGATTTCAATTAAAGGACGCTTTCAGGAAGTTGTGTACACTGTATTCTCACGTTTAGCCCAGTTTACGTTGCTTTCCTCCTTTATGAAATGTTCCACTGGAGATCTGGAGAGAACTGTACGCTCCTATGCACCGTCTCttttattaaagcataaaaagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141784 lncRNA downstream 1349 22039782 ~ 22040106 (-) True G95903
TU141779 lncRNA downstream 166526 21874513 ~ 21874929 (-) True G95899
TU141539 lncRNA downstream 546302 21487514 ~ 21495153 (-) True G95715
TU141427 lncRNA downstream 1037804 21002627 ~ 21003651 (-) True G95643
TU141426 lncRNA downstream 1039611 21001337 ~ 21001844 (-) True G95642
TU141782 lncRNA upstream 63010 22114696 ~ 22120442 (-) True G95902
TU141813 lncRNA upstream 84250 22135936 ~ 22136391 (-) True G95922
XR_006252426.1 lncRNA upstream 85702 22137388 ~ 22142772 (-) True LOC122357128
TU141834 lncRNA upstream 122640 22174326 ~ 22244477 (-) True G95934
TU141833 lncRNA upstream 176498 22228184 ~ 22230539 (-) True G95933
XM_043254889.1 mRNA downstream 16845 21908358 ~ 22024610 (-) True LOC122356328
XM_043254705.1 mRNA downstream 174557 21847430 ~ 21866898 (-) True valopa
XM_043256061.1 mRNA downstream 718452 21269350 ~ 21323003 (-) False LOC122356942
XM_043256060.1 mRNA downstream 718454 21269350 ~ 21323001 (-) True LOC122356942
XM_043255250.1 mRNA downstream 786817 21209818 ~ 21254638 (-) True LOC122356506
XM_043256219.1 mRNA upstream 100349 22152035 ~ 22156844 (-) False tmem254
XM_043254898.1 mRNA upstream 105979 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA upstream 105979 22157665 ~ 22183173 (-) True srfb
XM_043254790.1 mRNA upstream 133354 22185040 ~ 22227004 (-) True ptk7b
XM_043255446.1 mRNA upstream 179763 22231449 ~ 22250313 (-) False klc1b
unassigned_transcript_1933 other downstream 387774 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 467134 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1931 other downstream 627584 21413800 ~ 21413871 (-) True trnag-gcc_70
TU141433 other downstream 861238 21007472 ~ 21180217 (-) True G95646
TU141260 other downstream 1469893 20570038 ~ 20571562 (-) True G95526
TU141816 other upstream 86643 22138329 ~ 22143970 (-) False LOC122357128
TU141794 other upstream 100056 22151742 ~ 22156824 (-) False tmem254
TU141795 other upstream 100056 22151742 ~ 22156859 (-) True tmem254
XR_006252351.1 other upstream 181128 22232814 ~ 22250313 (-) False klc1b
TU141832 other upstream 184418 22236104 ~ 22238570 (-) True G95932

Expression Profile