RNA id: XM_043255740.1


Basic Information

Item Value
RNA id XM_043255740.1
length 3501
RNA type mRNA
GC content 0.47
exon number 20
gene id srbd1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6788832 ~ 6840561 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTGGTTTTGTAAATGAGCAACTTCAGTAGGCTAACATCTCTGCTTTAATCACTGGTCGTTTTCATATAACAACCCATGCAAATCACACGCACGTGGTCACGCGCTAAATTCAAAATTACTCTCTGATTCTACGGACACAGTTTTGATTGATGGCCGCTTAACATTTAGCATTCACAGCGACAGTTAAACACGCTTTACGGTCGCCATGGATACTTTGGATATATGTAACGTGACATCTAACGGACAGGTTTTTTTGTATAGCGTTAGGCGATAACATAAAAGTAATGAGTTGAAAAAAGATACTCACTTTCACGTTTTAAAATAGTTCTCGTTTTTATTATCCCAGCCAGTTATCCTTATTTgctattttcattaaattcGTTTTCAATCGTTTTTCTTACGCAAAGATGCTTCGAAGAACAAGAACAGCAAAGGTTTATACAGAACCGGCCACAGATGATGAATCCGATGACATGACAGGTCAACAAAAAGACGCCGATGACAGTGAGGAGTTAGAAGAATGGTTACCAAAGTCAAATGAGGGCAAAACTACAGGAAGGCGTCAGAGGGGGAACGATGAAACCGgcgaaaagaaaaaagtgaccAAGAGGGTGGCCAAACCTAAAGAGCCAAAACCTAAAGCAGAAAGGAAGCCCAGAGCTGCACGGGTTCCCAGAGCGAAGGAGAAGACTAATACAGAGCAACAAGCTGAGGATGCGGTTCAAGCGAAGCCCGAGTTACAGCAGCATGTGACGGTCAAAGAAGAGaggtTGTCCGTTAACTTGAGCGGTGATGCGCCTGATGAGTGCCCCTCATCCAGTCAGCATTTCCCCAAGGTGAAAAAAGAGGAGCCGGATGACAGCTTCACCTTTGATGAACCCGCTCAGAAGAAGCAGAAGACCACAGACTCAGCCCAGGGAAGACCGATAAAACTCAGATCGGCCAATTCCTGTGCGGAGGACTTAcagacgaattgggatcccattcagGTCCTTGCTGAGAAGTCTGGCGTGGAGCAGTGGGTGTGTGCAAACATCGTACAGCTTTTCCAGGAGGAGAACACCATTCCCTTCATGGTGCGCTATAGAAAAGAGCTGATCAACCATATGGATGCCGATGCTGTTCGAGATGTGCAGCTCACTCTTGAAGAGTTGCGGTCGGTGGCAAAGAAGATCAGATCTGTCTCTCAGACACTAAAGAAGGAGGGGGTTCTCACTTCAGAGCTGGAAATGGTTCTAAAAAACTGCACAACTGCTGATGAAATAGACCATGTGtaTGCTCCCTATAAAAAGGGCAGTAAGTTGTCCAAGGCCCGGCGAGCTAAGGAGCTAGGACTGGAACCAGTTGCACTGACTCTTCTTCAGGAGCCTCAGAAAATGGACCTGCAATCTTCGATCCAGCCCAACACTAAAGGGTTGTCGACCCCAGATGAGGTGGCCACAGGTGTGCAGGAGATCCTGGCAGATATGATTGCAAAGGACAAAGAGACTCTCACCTATGTACAGTCACTGTGTGACAGGAGTGTGGTGACCATTCACTCGTCAGTGTCTAAAACAGCCCTGAAAGAACAGCAGCCCCAGCAGGGCAATCAGAAGAGCAAACCGAAAGACATTGCCAAGTTTAGCCTGTATGTTGACTTCACCTGTGATGTTCAGCGCATCCAGCACCATCAGACGTTAGCCATTAACCGTGGGGAGAATCTGAAGATTCTGACAGTGAAGGTCAACATCCCCGACAGAGTGAAGAATGACTTCTGTAGGTGGTGCATCAACGTCAGGTGGAGGCCACAGGGATTCGCACGGCCAGAATTAATGAcgattttgaagaatgctgttGAAGATTCCTACAGGAGATTCATTCTGCCCTTTCTCAGTCGAGGCTACAGGACTAAGTTGACTGCTAGTGCAGAAAAAGAGTCCATCGCCATGTTTGTTCGAAATCTGCGTCAGCGCCTTCTGATGTGTCCGGTGCGTGGGAGAGTCATCATGGGAGTGGACCCAGGGTTTCACCACGGCTGCAAAATAGCGATCCTGTCCCCCACCAGTCAGATTCTGCACACAGATGTGGTGTACCTCCACGGTCCTGCTAAACACAAAGAAGCAGAAAAACTGCGCCATCTCATGTTAAAACACAGcTGTCAAACAATTGTAATTGGAAATGGCAAAGCGTGCAGGGAGACTGAGGCCTTCTTTACGGATCTAATTAAACGTCACTTCTTCAAGCCCCTCGATGTGTCCTACTGTATAACAGATGAAGCGGGAGCGTCCATCTACAGTGTGAGTCCTGAGGCTGTTAAAGAGATGCCTGACATGGATCCCAACTTGAGAAGTGCAGTGTCCATTGGGAGGCGTGTTCAGGACCCTTTAGCGGAACTCATTAAGATCGACCCCAAACACATCGGTATCGGAACTTATCAGCACGACGTGTCACAGAGTTTGCTGAGGGCAGCGCTGGATGGGGTGGTGCAGGAGTGTGTGAGCTTCGTGGGAGTGGACATCAACATCTGTTCAGAGACGCTGATGAGacACATAGCAGGTCTGAATGCGGGGCGAGCACGCAGCATTATGGAGTGGAAAGGAAAGAACGGGCCTTTTCTCAACAGAGAGCAGCTGAAACTGGTCAAAGGCCTCGGTCCTAAGAGCTTCCAGCAGTGTGCCGGCTTCATCAGGATCAACCCCGAGACAGTACGCAGTGTAAGCAGTGTCTGTTCTGGAGGGAATGAAGACCTCAATGTTCCTCTGAAACAGACAGctgagaagaaaaaagtcaaagGCTCTCGGAGCACTCTTAACCAGTTTAACCCACTGGACCAAACCTGCATCCATCCCGAATCCTACAGCATCGCCTTGAGGTTTTTGTCTCAAATAGGGGGCAGTTTGGATCAGATGGGTAGCGCTGCGCTCAGGCAGAGTATTGAGAGCAGTGTTAAGAGCAGAGGTCTAGATGTCTTGGCCAAATCTCTGGACACCACACCTGAGACTCTTCAGCTCATTGTGGATGGCCTCACTCAGCCACCTGGCTTTGACATTCGTCAGGATTTTGAGCAGGCAGATTTCAAGCGGGAAATTGTATCTATGAATGACCTACACAATGGAATGGTGGTAACAGGCCGTGtaacaaacactgctttatttgGAGCCTTTGTGGACATTGGAGTCGGACATTCTGGTCTCATCCCGAAGCGTTTCATCACTCCGGATAAGCTTCCTCTTGACCAGCGCCGAAGAAGCCTATCTCTTGGCCCAGGTGAGCGGGTAGAAGTACGGGTCATAAATCTGGAACTTCAGAGAAATCGGATCACTTTGGACCTTATTAGGGTTCTCAGATAGGAACtattgattaaaaatttctGTAGTTAAGTCTACTTTACAACTCATTTGACAAAAGTTAAtatcttttgttctttttcaaaTATGCTGTTTATGTTCTGTTCAACATTTGACCTGCTGTTACTGTAGTTTTCATAACTTCAATAAAATAGATATCTTGCTCTGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135536 lncRNA downstream 1225 6787267 ~ 6787607 (-) True G91513
XR_006252424.1 lncRNA downstream 84909 6693662 ~ 6703923 (-) True LOC122357105
TU135512 lncRNA downstream 101537 6687077 ~ 6687295 (-) True G91490
TU135475 lncRNA downstream 250464 6536601 ~ 6538368 (-) True G91459
TU135474 lncRNA downstream 289276 6497941 ~ 6499556 (-) False lrpprc
TU135614 lncRNA upstream 38759 6879222 ~ 6879894 (-) True G91574
XR_006252306.1 lncRNA upstream 176760 7017223 ~ 7045575 (-) True LOC122356287
TU135810 lncRNA upstream 969397 7809860 ~ 7810104 (-) False si:dkey-191g9.7
TU135853 lncRNA upstream 1138357 7978820 ~ 7980706 (-) True G91758
TU135856 lncRNA upstream 1143483 7983946 ~ 7984316 (-) True G91760
XM_043254638.1 mRNA downstream 65966 6720061 ~ 6722866 (-) True six2a
XM_043256146.1 mRNA downstream 228171 6553488 ~ 6560661 (-) True prepl
XM_043254848.1 mRNA downstream 289259 6453531 ~ 6499573 (-) True lrpprc
XM_043254850.1 mRNA downstream 344384 6433477 ~ 6444448 (-) True abcg5
XM_043255440.1 mRNA downstream 355804 6429382 ~ 6433028 (-) True dync2li1
XM_043255496.1 mRNA upstream 20825 6861288 ~ 6863797 (-) True prdx3
XM_043255493.1 mRNA upstream 27235 6867698 ~ 6871804 (-) True dennd10
XM_043255494.1 mRNA upstream 27235 6867698 ~ 6871802 (-) False dennd10
XM_043255800.1 mRNA upstream 153689 6994152 ~ 7010113 (-) True LOC122356744
XM_043256324.1 mRNA upstream 215786 7056249 ~ 7071527 (-) True fam204a
TU135441 other downstream 398117 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 563099 6225261 ~ 6225733 (-) False LOC122356805
XR_006252268.1 other downstream 2099664 4672966 ~ 4689168 (-) False LOC122356061
unassigned_transcript_1925 other upstream 290682 7131145 ~ 7131215 (-) True trnag-gcc_67
unassigned_transcript_1927 other upstream 294609 7135072 ~ 7135142 (-) True trnag-gcc_69
TU135889 other upstream 1203102 8043565 ~ 8047901 (-) True G91775
TU136576 other upstream 2274630 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 3345298 10185761 ~ 10190510 (-) False LOC122356841

Expression Profile