RNA id: XM_043255842.1


Basic Information

Item Value
RNA id XM_043255842.1
length 2961
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC122356783
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3209792 ~ 3227749 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgtTTGcgCACTCGTGGACGCCATTGGGAGTAATTTCACTTGTTGCCAATAACTGCGGTTTCATCGAACGGGAGGATCTGAAGaagttttcttttgtgtttgatgctttttttggaAACCGGGCTCTCCTGTTGCCTGGAGTTAAAGTACATTTCACAGCTGTGAAAAATCTGGGAAAAGATTGTGCAGTTGATGTGAAAGTGGCCCCAGGAGGAACCGAAGACATTGACAGCACGGTGTATGAAGGTGTAGTTCTCACAGTCCTTCCTCATGACAACGTCAAGGAGGCCAATCCTGGCTGCATCAGGACCATCATCTCCAAGGATCCCATTAAACTGCCCTTTGGAAAAGCGGACACCAGTGTGACTCTGCTGCTGTATGATCGTGTGGAGTTCCAGCTGCTGACGAATGTTATTACTAGGGAGCAAAGAGCCACAAACATCAAACCAAAAACTCCTGACACTTTTCAGCTCACCAAAGAAGTCAGGGAGATGGGTGTGATTATTAATAAGAGCGATGAAACCCTGACCATCATGACACAGAAACATGATAGCCTGACCGCCACATCTACTGACAATTTATCAGATGAAGAGCTGAATGTCATGGATGAAGTGGAGCTCACCATTTTGACTGTGAACGACACAAAGAAGGCCGTCCGACTCAAGAAGCTGCCCGAAGGCTCTGTCACCTTTAATCAAAAAGCAAAAGGCAATGAAAATATGTCTGACACGAACGACAATACATCTGGCACTGGCCCTGTCAAAGACAAGTGGAAGCCTGTGAACACAGAAGCTGGTTCTCAAGATTTAGATGTAAGCAGTGAGAAATACGAGGGGACCATTACTCAAATCGTCCCAAAGAAAAGCCCAAGTGAGGACAAAGTGATGGACAATCAAGAGTGCTCTCTGGGTTTTCTGGTCACCACAGTGGAGGGCACAGAGAAGCGCTTATCTTTTAAGTCAGGTGATGTGATCACAAAAGCCACCATGATGCTTGGTGACAAGGTCCAGTTCAACATCTCCACCAACGTTGTAACTAAGGAGGAGTGTGGCGTCAACGTAGAGATCCTGCCAGAAACTTTCCAGACGGACTCTGAAGAGCAGCGAAAGATaGGGCTTGTTGTCAAGCTGGATGATAATTTTGGGTTCATCAAGACACAACAGGACCCGCAGCTATTTTTTGACATAAGTGAAGTTATGGAGGACACCAAACTCACTTTATCTGAGAAGGTTGAATTTACGTTAGTACAGAATGAAGCAGCTGAAGGGGGAAAACATGCTGTTAGAATAAGAAGGCTGAATGAAAGTGTCTTCACATCTGCACCAAAATTAGAGGCCTTTGGAGTAAAAGAGAAGAAGAAAATGACTATCAAATTGCTGAAGGATCCCAAAGACCAAATCAAGGAGGAGGTCAAAACAGAGGCCAAAGTCAGTGAATCAGTGGATGTAGACAAGGGAAAAGACAAGCCCTTACCATATAAGTCATCTGCAAAAgatctgaagaaagaaagtgacagtaaacaaGAAAGCACTAAAGGTGATAAAGTCACGAGCAGAAGCAGGGAAAACAGTCGGCGTCGGTATAGTAGTCGAAGCAGAAGCAGGGAAAGTGGTCGACGCAGATACAGTCGCAGCAGGAGCAGAAGCCGAGACAGAAGTAGGAGCTACTACAGAAGACGCAGAAGTACCAGCCGTGAGAGGAGGGACAACCGGTACAGATTCAAACGCAGCCGCAGTCGGAGCAAAGAGCATGTAGAGAGATCCCGACGGAGTCACAGCAGAGAAAGGAGCAGTCAGAGTACTAGGAAGAGAAGCCGCAGCCCTGCTGACAAATATGATCACTATGCAAAACAAAGCGGCAATAAAGATTTAAGTGACAAGAAGAAAGTTAAAAGCCCTGACGATGTAGAGGAAGAACTATTGAGAAAAAGGAGAGAGCTAATGGAACTCAATGAGCTGATTGCACGTAAAAAAGCTATTGTCGCTATGGAACAAAATGCTAAGAAAATTGAACCTGAGGATGGAAAAAGTGGAGTTACAACATTTGATTATGAGCATGTGCATCGCGAGAACATTTGGATGCCTGACCTAAAACCAGTGAAGTCCATCTTGAAGAAACAGTCTGAACCTCACATTGACCCTAAATCTCAGGCATCTGCAAGCAAGGAAGTTGCTGCTCCTTTTGTAAAAAGTGAAAGTCAAGAGATGCAGATAGGATACCACCAACAGGCTTTTGGCTCACCTGGCTACTCAACATTTGAAAGTATTGCTGAGAGGACTTTAACAACTTCAGGGTCTGACAAGACAACTGTAACTCTGAGTCAAGATCTAGAATTGGTGAGACAAAAGAAGCAATTAGAAGATCTCAGTGAGTCTGTAGCACGCAAAAAAGCACTAATCGCCTTGGAACAGAAGGTCAAAGTTGTTCAGGAAATGCCTGAAATGGAAGCGGAACACAAGTTTGACTCACACACAGAAGACCAGTTTGTAATGACTAAAGGGAACTTATGGAGCTCTGTAATAAAACCTGATATTCAACCTAAAAGTCAATTTTGAAGAAACGCTCAGAGATTCTTACATCTCAGAGTGACAAAACCTCAGTTGATGAATATGGTCAGCTAAGTCAGGATGGTGATTCTTTTACAAAACCACCTTCCCAGAAGACAGCAGCTTTGCCATTTAATAGGTCCTCAAATCCACAATCAGTTCAGACCAGTATGTTGGGATTGTTCAGCCAGATCAAGAATGAGTCTTCAGCAGATTCACAGAGGATTGAAACACCCTCTTTTAACAAGCCAGTTATCTCACAGTCACACTCTCAGGTCTCCAGTTTAAGGTCTTTGCATGAGCAGAAATCTTCCAGTATGTCTAAAGGTAGCAATTCTCAGGATGACCAACACAGGGCATCATCTCACCTGCCTCATCCTCCTAGCAGTATCCCTTCAACCAGTCAGACTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133714 lncRNA upstream 5773 2857325 ~ 3204019 (+) True G90319
TU133743 lncRNA upstream 8305 3199847 ~ 3201487 (+) True G90326
XR_006252271.1 lncRNA upstream 188901 3020068 ~ 3020891 (+) True LOC122356074
TU133791 lncRNA upstream 192572 3016794 ~ 3017220 (+) True G90339
TU133785 lncRNA upstream 199151 2982743 ~ 3010641 (+) False LOC122356072
XR_006252296.1 lncRNA downstream 18514 3246263 ~ 3247132 (+) True LOC122356226
TU133829 lncRNA downstream 87914 3315663 ~ 3315908 (+) True G90365
TU133839 lncRNA downstream 174215 3401964 ~ 3403754 (+) True G90373
TU133844 lncRNA downstream 222424 3450173 ~ 3450485 (+) True G90378
TU133848 lncRNA downstream 241698 3469447 ~ 3489791 (+) True G90381
XM_043255841.1 mRNA upstream 39 3207411 ~ 3209753 (+) True LOC122356782
XM_043254522.1 mRNA upstream 154494 3053506 ~ 3055298 (+) True LOC122356070
XM_043254519.1 mRNA upstream 159125 3022616 ~ 3050667 (+) True LOC122356067
XM_043254525.1 mRNA upstream 215004 2982703 ~ 2994788 (+) True LOC122356072
XM_043254845.1 mRNA upstream 230543 2971146 ~ 2979249 (+) True LOC122356304
XM_043255847.1 mRNA downstream 1364 3229113 ~ 3231423 (+) True LOC122356787
XM_043255849.1 mRNA downstream 7294 3235043 ~ 3246109 (+) True znf318
XM_043255234.1 mRNA downstream 92680 3320429 ~ 3398358 (+) False tjap1
XM_043255237.1 mRNA downstream 92681 3320430 ~ 3398358 (+) False tjap1
XM_043255236.1 mRNA downstream 92682 3320431 ~ 3398358 (+) False tjap1
TU133820 other upstream 60 3207776 ~ 3209732 (+) False LOC122356782
TU133730 other upstream 17679 3190326 ~ 3192113 (+) True G90324
TU133737 other upstream 20111 3187826 ~ 3189681 (+) False G90324
TU133738 other upstream 20111 3187826 ~ 3189681 (+) False G90324
TU133813 other upstream 29859 3179427 ~ 3179933 (+) True G90349
TU133796 other downstream 43576 3271325 ~ 3274372 (+) True G90343
TU133812 other downstream 50088 3277837 ~ 3280997 (+) False G90348
TU133811 other downstream 51453 3279202 ~ 3280997 (+) True G90348
TU133843 other downstream 221652 3449401 ~ 3450017 (+) True G90377
XR_006252394.1 other downstream 392657 3620406 ~ 3713763 (+) False prkn

Expression Profile