RNA id: XM_043255843.1


Basic Information

Item Value
RNA id XM_043255843.1
length 3533
RNA type mRNA
GC content 0.42
exon number 17
gene id brf1a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12450571 ~ 12485662 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCTGGAAATGCGCCATCATTGGGGGGAAACTTCCACACTGGGGTTGGGAGGGAGTCCAGAGCTGCCACCCTGCAGAATGGAACTGAAGCTGCTGTAAATGTGTCAAAAAACCTGACTGTGATCTTTGTATTTAGCCAAGCGACAAATAAACCATATTGGTCATCAGCTTCAAATGAATCGGCACTGTCTGGACACTGCCTTCAACTTTTACAAGATGGCCCTCTGCAAGCACCTGACCAGAGGGCGCAAATCATCCCACGTCATCGCCGCCTGCCTCTACCTCGTCTGTCGAACGGAGGGAACACCTCACATGCTGCTAGACTTGAGTGACCTCCTTCAAGTGAATGTGTATGTTTTGGGAAAAACCTTCCTTGTTTTAGCCAGAGAGCTGTGTATCAACGCGCCAGCTATTGACCCGTGTCTTTATATCCCGCGCTTTGCACAAATGCTGGAATTTGGAGAGAAGAGCCATGATGTTTCAATGACGGCACTACGTCTCCTGCAGAGGATGAAGAGAGACTGGATGCACACGGGACGGAGACCTTCAGGCCTCTGCGGAGCAGCACTCTTGGTTGCTGCCCGTATGCACGAGTTCCGTCGTACAATGAAGGAAGTTATCAGTGTGGTGAAAGTCTGTGAAGCTACACTAAGGAAAAGACTGAATGAATTTGAGGACACGCCCACCAGTGAGTTGACAATTGAAGAGTTCATGCGGGTGGATCTGGAGCAGGAGTGTGACCCGCCCTCTTACACGGCTGGAATCAGGAAGCAAAAGCTAAAAGAGattgaGCAAGAGCTTGCAAAGAAAGTTGATGATATTGAAGGTGAAATCTGTGGATATCAGGATGAGATTGAAGTCGAGCTGGAGAGCTGCAGACCCAAAGCCAGGGGGATTTACGCATCCTCTTCTAAAGATGaTGATGTGATTTCCTTGGCATCGTCCAGCATTCTAGTTGGTGATGAGGAAGGAGAAGATGATGAGCTGAGGGCAGCAGCATCTCACCTGTGCAGTACTGTAGGCGAAGAAGATGGAGATGGCAGTGAGCAGgatggagatggagagagagtcTCTCCAAATAAACGGCCCTCGTTGGCATTATTGCTTGGAGCGCTTCCCACTGCAGCCAGTTTGGGCCTGCCCGAGTCCATCACCAAAATGAGCGAGGAAAAGGAGAATGACGTGGAGGCTGAAAGCGGTGAGCTAGATCTCAGTGGTATCGATGAGGATGAGATCGATCGGTATATCCTTAATGAGAAGGAAGTTAAGGTGAAGACTAAACTGTGGATGCTTCAAAATGCAGACTACCTCAAAGAACAGAAAGaaaaagaggagaaaataGCAAAAGAAAAGGAGGAGGGTACATATAAAGAGCGTAAGCCTAGAAAGAAGGCTCAGAGGCGTGAGCCCATCAATGCCAGCACTGCAGATGAAGCCATCGAAAAGATGTTGGAGCAGAAACGCATCTCCACTAAAATAAACTATGATGTTCTGAAAGACTTGAACAAATCCAGCCCAAAAAGTCCCACTCACCAGACTGAAGAAGCTTCTGCTGGAGCCAAAAGAACCCCCACGGCCCGCCAACGGAAACCCCAACTGACTTCACCCAAGATTGGCAAAACGATCAGCAGCTTTGGCAAGAGGTTACAGCCCCTGGTGTGTGCACAGCCCTCTAAGAAGCTGGCCCTCGATCAGAAAGGGTTTGGTGCCCCTGTGGCCACTCCTGCTGCCCCATCCCAAAATACTGTTGTTGTGGAGAGCGGACCGGTGGCATACGAAGAGCCTGCAGATGAAgaagaggatgatgaggaggacGAACGCTGTGTCAGTGCCATGCAGTTAATGGGCGGCACTGATTATGGCTATGAagtggatgatgatgatggcttCTGAATCCAGAGGGCCTGTGGGAGCACCATTGGAGAGGACACACTAACGCTTACCCAGCTGCTTACTCTGACCCCAAAACACACGTGCAACCTCCATCTCATTACCTCTAGTGTCCCTGCTTATGTTTacaagatgacaaaaaaaagaacttttacACACTACAGAGACttgaaaaatacagcttttcatTTAACGTTCTTCCTTTTTCATAGGTGTGTGTTCTGAGCTCATATGCACCAAGTTAAACACCATTTAAACTCACAGCACACAAACAAGAGAGAGTGTAAATggatgcgtttgtgtgtgtgtgcgtgtaggGATTGAAAGTGATGATTCTCTCTTTGGAGTGTGTAAGCCTGCTAGCTAACTGCATTACTGTGTGTTTTAGGCTAATGATGACATATGATCTTGCACATCTAAAGCGATTAGCCCACACGAGGCTCAGGCCTCTGTGTGGACAAATGTGTGCATGTACACGTGCCTTTAAATATTGCAGTATACAGGCCTGGAATAGTATTGTGCTGATTTTCTGGGCCaaagtgttacattttaaaccaGATGTAGCTTTATGTGCTCGGTTAAAATGGATTAGAGACAGTAAAATATGATTCGTAACAGTGTTAAATTTTGTTCCGCTGCTTGGCTGGTTTTCcagtgcttttttattattattattatacagttaCCTACTGGTATGGTAGATTTTCCAGTTGGActattgaagtttttttttttttcagtataatgCTTAAATGGTActctaacttttatttttgatttgatagttattgtttttctgatttaatataGAGACATAGATATCAAACCAAATGAGAATACTTGAAAAATTCATTccagataaatgctgttaaagcgtcattaaatcattttgaacatttacaaaaatgcaaaatacatatatatacacacacacattttttttccaaagaaaaatgtttacattgcTAGATTGTTTTGAAATGGACTGATGtcaaagaaataatatattgataGTTTAGTATTGGTCTGTTAATAAGGAAGAATGAGTGTTTTAATTGTACCATTTGTATCTCCCTTAGTAGGATTGCTCTTTGagaacattttactttatttatagtTTGTACTTTCCGAGACAAGATAAgagtgagatttttttatttacttcagtTGGAAAAGTATTTGAAGGGTTTATTCAATCAGTCATGCCACAATACACATAGATATTACTGATTTAAAACCAAATAGTTCCAAATctgataaataaaagtacaggttacattaaatgttaaatacatatataagtaGTGACTTTAATTTGGGAGTTTTGATTTCGGATTAGACCGCAACCTTGAGCTGTATTGAAATCAACAATTGATAAATACTTAATGTCTTGGTGATTTCTtgcatgtataataaaaatcattagtatGCAATCCATCAGGATTTTCAAAACTGGAcacatttatagttttattttgttcttaaagtttaattgcattttgCTCTATACTATTACAGCTATCTTGATTTTGGAGTCAGATTggttttgaaaaagtaataGTGAGattaaaacagactgaaaaaaagtgttgagTAAACTTAAACAGTATTTATGGCcaaagaaataaagaatattGATTATG

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138024 lncRNA upstream 1197 12448374 ~ 12450446 (+) True G93280
TU137947 lncRNA upstream 15000 12431949 ~ 12436643 (+) False LOC122357045
TU138003 lncRNA upstream 66025 12385307 ~ 12385618 (+) True G93267
TU137945 lncRNA upstream 70792 12379709 ~ 12380851 (+) True G93219
TU137949 lncRNA upstream 77512 12363065 ~ 12374131 (+) True G93222
TU138036 lncRNA downstream 48323 12533985 ~ 12535064 (+) False jag2a
TU138044 lncRNA downstream 82822 12568484 ~ 12569100 (+) True G93295
TU138033 lncRNA downstream 110260 12595922 ~ 12597301 (+) True G93285
TU138058 lncRNA downstream 116529 12602191 ~ 12602541 (+) True G93306
TU138293 lncRNA downstream 671268 13156930 ~ 13158438 (+) False tasp1
XM_043256226.1 mRNA upstream 15066 12431919 ~ 12436577 (+) False LOC122357045
XM_043256225.1 mRNA upstream 15066 12432950 ~ 12436577 (+) True LOC122357045
XM_043254685.1 mRNA upstream 22519 12423676 ~ 12429124 (+) True dcdc2b
XM_043256343.1 mRNA downstream 2919 12488581 ~ 12493739 (+) True LOC122357113
XM_043256344.1 mRNA downstream 3108 12488770 ~ 12493739 (+) False LOC122357113
XM_043255045.1 mRNA downstream 16723 12502385 ~ 12535071 (+) True jag2a
XM_043255046.1 mRNA downstream 16723 12502385 ~ 12535071 (+) False jag2a
XM_043255091.1 mRNA downstream 71481 12557143 ~ 12559518 (+) False cfl1l
TU137630 other upstream 846791 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 847419 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 873784 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 1233468 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 1236556 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 85969 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 101224 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 730996 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1253945 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1868454 14354116 ~ 14367135 (+) False frmd6

Expression Profile