RNA id: XM_043255845.1


Basic Information

Item Value
RNA id XM_043255845.1
length 2444
RNA type mRNA
GC content 0.48
exon number 4
gene id btbd6a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12457871 ~ 12461979 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAACACAGAATTTACAGGAGGGATAGAGCTCTGGGAGAGACAACCCTCTATCGTGACGTCAGCCGAGGGAGAgagagctcaaaataaactCAAACTTCATCATCATTCCGTGTGGCCACAGCGGAGGAAAGATCTGCTTGGCCGCTATAAGACTACAGACCCTATTTTGTCTATATTTGCTGTGTGGTTTTGGAGAGATTGCTTTTGAAGTTTGCAGTACGGGACTGGAGAGGATGCGAGAAAAAAGAGATACAAATATTCGCTGAAATCCGAAAATGTATGTGACCGTTTAGCGGAGCAGTTTTTGTACTCACACGGAAACCACGCAACATTATTTAGGAATACCACGGACCACGGTTGTAGcagataattattttttatacgCATATTTTGGCAAACTTTTTTGTTCTGATGCCCGCTGAGTCGGAGTGCAAGTTGTCCCATCATGGCCGGATCATGAAATGCGTTACTTTTTTACTCTTGCTCCCTGAAACGTTAAAGAAGTTGAAGCGGGCAAGCAAGCACCCCGGCAGGCTGTCATTGTGCTATAACATCTTAACTCTTTCCCTGAAGAAAAGGATGGCGGCGGAACTGTACCCCGTGAACGATCACGCCACAGTGCAGAAGAATGGGACCGTGATGCTGAGTCTGCCGGAGAAGAAGAGGAGCGTGGAGCCGGTTGCGCAGTCCACCGCGTCCATCGCCACCACACCGACCACAGAgcaaaacatcaacaacaacaacgtggAGATTCCCAGCTGGCACTCCGCGCACCCGACTTTACGCGAAAGAAACGCGCTCATGTTCAATAATGAACACATGGCAGATGTTCATTTCATTGTTGGTCCGCCTGGGGAATCAGAAAGGGTCCCGGCACACAAGTATGTGCTGGCAGTGGGAAGCTCTGTTTTCTGTGCCATGTTTTACGGGGATCTCGCAGAAGGAGACTCTGATATCCATATTCCAGATGTGGAACCCGCTGCTTTTCTCATCCTGCTCAAATACATGTACAGTGATGAGATAGAGCTGGCGGCCGACACAGTATTGGCTACGCTTTACGCTGCCAAAAAATACCTGGTGTCTGCTCTGGCTCGCGCATGTGTGGGTTTCCTCGAGACGAGCCTGGAGGCGAGAAACGCGTGTGTTCTGCTATCTCAAAGTCGGCTGTTTGAGGAGCCGGAGCTCACTCAGAGGTGTTGGGAAGTGATTGACGCCCAGGCAGAGCTAGCGCTGCGCTCGGAAGGATTTACAGAGATTGACTTGCCCACACTAGAACACATTTTACAAAGGGAAACTCTGAACGTGAAGGAGGCGGTGGTTTTCCAGGCCATCCTGGGATGGGCCGACGCAGAGTGTCGGAGACAAGGCCTGAGCCCCACTTCACAGAACCAGCGCTCCATGCTGGGGAAGGCTCTGCACCTTGTGCGTCTGCCTTCAATGACACTGCAGGAATTTGCAGATGGAGCTGCGCAGTCGGACATTTTAACCCTTGAGGAAACGCACAGCATCTTTCTCTGGTACACGGCTGCTACGAAACCTGCACTGGGATTCCCAGTTGTGCCCAGGAAGGGGCTGACGCCACAGCGCTGCCACCGTTTCCAATCCTCGGCGTACCGAAGCAACCAGTGGCGCTATCGCGGGCGCTGCGACAGTATCCAGTTCGCTGTGGATAAGCGTGTGTTTATCGCCGGACTTGGTCTGTACGGCTCCAGTGGAGGGAAGGCGGAATACAGCGTCAGAATTGAACTAAAGAGACAGGGAGTGCTTCTTGCACAAAACCTGACCAAATTTGTGTCAGATGGTTCTAGCTCTACGTTCCCCGTGTGGTTCGAGCACCCGGTACAAGTGGAGCAGGACACGTTCTACACTGTTAGCGCCGTTCTAGATGGGAGCGAGCTGAGTTATTTTGGACAGGAAGGAATGACAGAAGTCCAGTGTGGGAAAGTCACCTTTCAGTTTCAGTGTTCCTCTGACAGCACCAATGGGACAGGGGTGCAGGGGGGACAGATTCCGGAGCTGATATTTTATGCATGAAAACTTGGACTGATTCATTAAAGAAGAGACAGCGGggggattttttttcctctcaaataaatgcctttactcACAATAGCTGCAAGACACTACTACAAGAGGAGACTATCCCCtctaattcagtttttttttacgtttcacACATAAATGGAATGCTTCCcaaacttatttatttctttaaacatactgttttaaaacatgtactttaatttaagcacattttatttctaattattcattatatgcCTGTGTACAGTCAGTAAAACATGGGAAGTTTGCACTTGAAACTAGGCAGCTTTTCCTCTGTCTTGTTATTTAATGGTTATTTGTTGACAGCTTGATGCTGAGTGACCTAAAAAGGGTTTCAAGAGCCtgcaaaatcataaaatatgtttCTATTCAAACTaca

Function

GO:

id name namespace
GO:0050767 regulation of neurogenesis biological_process
GO:0000932 P-body cellular_component

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138169 lncRNA downstream 27185 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA downstream 27185 12429222 ~ 12430686 (-) True tmem234
TU138139 lncRNA downstream 50938 12401678 ~ 12406933 (-) True LOC122356854
XR_006252392.1 lncRNA downstream 50979 12401671 ~ 12406892 (-) False LOC122356854
TU138102 lncRNA downstream 172817 12278567 ~ 12285054 (-) False vti1b
TU138211 lncRNA upstream 70981 12531981 ~ 12533886 (-) True G93392
TU138213 lncRNA upstream 72986 12533986 ~ 12535068 (-) True G93394
TU138291 lncRNA upstream 644079 13105079 ~ 13105684 (-) True G93460
TU138302 lncRNA upstream 695930 13156930 ~ 13158437 (-) True G93470
TU138314 lncRNA upstream 701145 13162145 ~ 13162370 (-) True G93471
XM_043254541.1 mRNA downstream 12993 12441039 ~ 12444878 (-) True LOC122356084
XM_043254688.1 mRNA downstream 27093 12429197 ~ 12430778 (-) False tmem234
XM_043255917.1 mRNA downstream 58343 12395781 ~ 12399528 (-) True nusap1
XM_043255916.1 mRNA downstream 66122 12379697 ~ 12391749 (-) True rtf1
XM_043256217.1 mRNA downstream 78654 12373606 ~ 12379217 (-) True golga5
XM_043255042.1 mRNA upstream 99158 12560158 ~ 12575184 (-) False rrbp1a
XM_043255041.1 mRNA upstream 99158 12560158 ~ 12575183 (-) True rrbp1a
XM_043255073.1 mRNA upstream 119148 12580148 ~ 12586465 (-) True snx5
XM_043255088.1 mRNA upstream 127944 12588944 ~ 12591353 (-) True si:dkey-76k16.6
XM_043255087.1 mRNA upstream 130953 12591953 ~ 12594130 (-) True si:dkey-76k16.5
XR_006252291.1 other downstream 27093 12429197 ~ 12430778 (-) False tmem234
XR_006252352.1 other downstream 658839 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 926562 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1238886 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1522540 10924944 ~ 10935331 (-) True G92819
TU138208 other upstream 96077 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 1103422 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1235072 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1449339 13910339 ~ 13911837 (-) True G93875
TU138946 other upstream 1618532 14079532 ~ 14082758 (-) True LOC122356235

Expression Profile