RNA id: XM_043255874.1


Basic Information

Item Value
RNA id XM_043255874.1
length 2196
RNA type mRNA
GC content 0.56
exon number 13
gene id ppm1ba
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6516883 ~ 6543229 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACGACCATCAGGATCACTGAGGACTTCCATCAGCTGGCCTCTGATAATCTAATCAGTCTGCTATGGCCCTGTTATGATCTAATCGGTGATGTCATCAAAGAGCAAACGGGAAAAGACCTGGAATGGGAGTCGCGACGCCGCTCGTATGATGCAGCCgcccccgccatggagccaggcctggggccgggccGCATGCGAgctggtggccgggtcttgccccacggacCCGGCCGGCTCAGCCTGAACAGCGCAAATAcccccgtgggcccaccacctgtgagaggcggcaggctggtgggCTGTTTCAGCTCTCCCAGCGAAGGCCATGTGCTGGAGTTAACCGTGGATGTGAGGGACGTCGCGTACTCTGgttgggggaggactctcactgtcatttgtgcctacgggtcAATGGTGGGGAGGAGGCCGGATAGACTTGGGCAGCCCAAACGCACTGCGAGGTCTGCTGGGAACGctgcagagacccctgtcaggagATTCAACCCCGGCCCGCAGAACTTGACCGGATCCTCGAGGAGTGGCTGGAGACACGGTCCGAAATGGATCGCCATGTTCACTTTGacgacgcagccgtccggagctgtggtcGTAAAGTCTCCGGGTAAGGCGTCGCGGGCGGCAACCCCGAACCCGGCGGTGGACACCGGAAGCGGAGTGATGCTGGctgctgaagaaggagtcctatcgggcatggTTGGCTCCAGGACCCCTGAAGCAGCTGatgAGCGTGGCCTGAGGAATGGGGCGTTTTTAGATAAGCCCAAAACAGAGAAATACAATGCGCACGGGGAAGGGAACGGCCTGCGCGCTGGGCCTCCCAGCAGCATGCAGGGCTGGAGGGTAGAGATGGAGGATGCGCACACAGCAGCCGTGCAGGCCTGCCACATGGCTTGGATGACTGGTCCTTCTTCGGGCGTGTACGATGGGCATGCTGGCTCGCGAGTTGCAAACTACTGCTCCAAACATCTGTTGGAACATATCGTAGCTGCGGGGTCGGCAGATGAACTGCGGAAGGCTGGATCTCCGACACCGAGGCAGACGCCAGCCATAGAAGCGGTGAAGAGGGGTATCCGCGCCGGCTTCCTGAGGATCGACGAACACATGCGCAGCTTCACAGACCTGCGGAACGGCATGGACCGCAGCGGCTCCACCGCGGTGGCTGTGCTGCTCTCTCCAGAACATCTGTACTTCATTAACTGCGGGGACTCTCGGGCCCTTCTCTGCCGCAATGCTCAAGTCTGCTTCTCCACGCTGGACCATAAGCCCTGCGACCCACGGGAGAAGGAGCGCATACAGAACGCGGGTGGCTCTGTGATGATCCAGAGGGTTAACGGATCGCTGGCTGTATCCCGAGCACTGGGTGACTATGACTACAAGTGTGTTGAGGGCAAGGGCCCCACAGAGCAGCTTGTGTCACCGGAGCCTGAAGTGTTCGAAATCGCTCGGTCAGATGCAGAGGATGAATTCGTGGTGCTGGCGCGTGACGGTATTTGGGATGTGATGAGCAACGAGGAGCTGTGTGCCTTAGTGCGATCGAGGCTGGAGGTGACGGATGACCTTGAGAGAGTGTGCAATGAGGTTGTGGATACTTGTCTACATAAagGAAGTCGAGATAATATGAGTATTGTATTAGTCTGTTTGCCAAATGCACCCCAGGTGTCAGAAGAGGCGGTAAAGAGAGATGCTGAGTTGGACAAGTACCTCGAGTCACGAGTGGAAGAGCTCATTGAGAAAGCAGGGGAAGAAGGGGTGCCTGAGCTGGCCCATGTCATGAGCAGCCTGTCCCAAGAAAGCATCCCCAATCTCCCACCAGGGGGTGGCCTTGCCAGCAAGCACAGTGTTATTGAAGCAGTGTACAACCGGTTAAACCCCCAAAGAGAAGAAGATGGTAGTGGTGCTGACCTCGAGGACCCGTGGTAGTCGTCCTGCCCCTGAGGAAAGAGCACCTTTTCTACACAAGACATCAGTCATGTTTCTTTTGTTCCAGTGAAACCAAGAGATTCAACGGACAGTCCTTCAAGAGTCACAACACAATGGAAACAGTACAACCAAAAGCattacaaacactttttttctaatatatgAGGGAAAGAATGGAGATccagttttaaaaacaaactcaaacatgaaaaataactaaatacacatcatacaataaaaaaaacaaacaga

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135295 lncRNA upstream 63807 6452744 ~ 6453076 (+) True G91343
TU135268 lncRNA upstream 146355 6370210 ~ 6370528 (+) True G91324
TU135252 lncRNA upstream 158867 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA upstream 225440 6279559 ~ 6291443 (+) False akt3a
TU135249 lncRNA upstream 254968 6254603 ~ 6261915 (+) True akt3a
TU135514 lncRNA downstream 150433 6693662 ~ 6699169 (+) True G91492
XR_006252288.1 lncRNA downstream 180051 6723280 ~ 6755554 (+) True LOC122356144
TU135555 lncRNA downstream 271781 6815010 ~ 6861516 (+) True G91529
TU135574 lncRNA downstream 399338 6942567 ~ 6942795 (+) True G91545
TU135639 lncRNA downstream 503712 7046941 ~ 7047247 (+) True G91594
XM_043254849.1 mRNA upstream 65375 6444614 ~ 6451508 (+) True abcg8
XM_043255439.1 mRNA upstream 87496 6396742 ~ 6429387 (+) False cep170aa
XM_043256147.1 mRNA downstream 2278 6545507 ~ 6553326 (+) True slc3a1
XM_043256255.1 mRNA downstream 18003 6561232 ~ 6654233 (+) True camkmt
XM_043256328.1 mRNA downstream 160858 6704087 ~ 6707392 (+) True six3a
XM_043255743.1 mRNA downstream 297368 6840597 ~ 6843540 (+) True LOC122356727
XM_043255744.1 mRNA downstream 297374 6840603 ~ 6843540 (+) False LOC122356727
TU134595 other upstream 1518987 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2272842 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2272842 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2272842 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2444984 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 588197 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1292961 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1315469 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 1763257 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2123039 8666268 ~ 8683052 (+) False pcnx2

Expression Profile