RNA id: XM_043255880.1


Basic Information

Item Value
RNA id XM_043255880.1
length 6625
RNA type mRNA
GC content 0.48
exon number 32
gene id atrnl1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 7108678 ~ 7293308 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTCAGCTCACATCAACCGAGCGCTGTCGCTTTAAACGTAAGACGACTATTTCCTATCCTACTACGACAAAGGATCGGCTCTTGAATATTAAACGCGTGACGCGACCTACCGGACGCTTGAGGAAGGTTACCAAGCAACGTCAGCGTAAGCtacttaatattcatgagccaaaCCTTTTCCGTAGTGAGATTCGTCATTGGCTCTGAGCTCAGCGGGAGCAGCAGCGGGGAACTGCACATTGTTTTGGATGGGAGTTGCGCTGTCATTCTCCTCCGAGTGCATCTCTGAGAGAAACAAAGGCGAAACGGCAACAGCAGCACGGCTTATTGTTTGAGAAGGCATGCGGAAATCacgctgttatttttttttttgcgactACGGAGGCACAGTTTAACATAACTGCACATCTGTATCTCAAATGTCGCTGTTTCTAGAATGACACGGTTTTGGACGACGAGGCTTTTTTTGTGGAACAGCGCGCTGAAGCGAATGCTTTGCCTCGACAACTGACTGGAGAAAGTTGCGTTACATATCGGATGCATTAGATGCATGCTTTGCGACGATGACAACAAACTACAAATTGTAACCAAACTGCGAGGAGTGCGGAATTCACAGTTTTAAAGCCGAAGTCTAATGAAGACGGTAACCTCATCTCTATGCTTAGATCAGAGGAGAACAGGAGGATGGGTTTTGGCAGAAGAAGAACGTCTCCACGCTCCTCCACGAGGTGCTTCGCGTGCAGGACTCGGGAGCTCAGGACGTACCTGTTTACGTTTGTGGTGTTTTACCTGTTAGTGTGCACCGAGGGATCCTATTCTAAAGCATGTGATAAAAACTGCATCTTTGGAAGGTGCATCAATGGAACTTGCGTCTGTGAACGGGGATGGGCTGGGGATCAATGTCAACACTGCCAAGGGAGGTTCAAGTTGACAGAGTCATCAGGATCACTCACTGATGGACCAGTTAACTACAAGTACAAGACTAAATGCACTTGGCTGATTGAAGGATACCCGAATGCTGTGCTCAGGTTGAGGTTCAACCATTTTGCCACAGAGTGCAGTTGGGATCACATGTATGTCTTTGATGGAGATTCGATTTACGCACCTTTGGTAGCTGTGTTTAGTGGCCTGGTTGTCCCAGAGACTAAAGGAAATGAAACCATTCCTGAGGTGGTGACCACATCTGGATATGCATTGTTACACTTCTTCAGTGATGCTGCCTACAATCTTACAGGATTCAACATCTTTTATTCGATCAACTCCTGTCCTAATAACTGTTCAGGCCATGGAAGATGTACAACGGGTAACTCTATCTCCAGCAGTGTTTACTGCGAGTGTGAGCGGTACTGGAAAGGTGAGGCCTGTGATATTCCCTACTGTTGGGATGACTGCGGCAGTCCTGACCGCGGATACTGCGACCTCACCGGAGAAAAGCTCTGTGTCTGCAATGATAGCTGGCAAGGTCCAGATTGCTCTTTAAAAGTTCCTTCGGCTGAGCCGTACTGGTTTCTGCCTAACGTGAAGCCTGACGGACAGTCACTAGGCCGGGCTTCGCATAAAGCAGTGGTTCGTGGGAAACTGATGTGGGTGATTGGAGGGTTCACCTTTAACTACAGCTTCTTTCAGATGGTTATAAACTATAATCTAGAAAGCAGCGCATGGGATGTAGTTCCGATCAACGGTGGCCCTCTGCAGCGCTATGGACACTCTCTGGCTCTTCACGAGGATGATATCTACATGTTCGGTGGGAAGCTGGAGGCAGGCTCCGGTAATGTAACAGATGAACTGTGGCTGTTCGATACGCGCAGCCGTTCTTGGTCCCTTAGAACACCCAGCCCTGGGCTGCAGGTCCAACCCTTCGCTGTGGAGGGGCATACCGCTCACATAGTGGACGGCAAGAACGGAGAACCCGTCATGGTGGTGCTTTTTGGCTATTCACCCATTTATAGCTACCTCAGCCTTGTCCAGGAGTACAACATTCGCACTAACTCCTGGTCGGTGGCAGAGACGAATGGGGCGCTGATGCAAGGAGGATATGGCCACAGCAGCGTTTATGACAGCTCTTCACATTCCATATATGTCCACGGAGGATACAAAGCCCTCCCTGCCAACAAATACGGCCTGGTGGATCATTTGTACCGCTATCAGGTCCACACGCACACCTGGTTTATTCTGAAGGAAAGCGGTCTGGCAAGATACCTCCACTCTGCTGTGCTGATCAGTGGAGTTCTGCTGGTGTTTGGGGGAAACACTCATAATGACACCTCACTCAGTAACGGGGCCAAATGCTTCTCCTCCGACTTCCTGTCCTATGACATCGcatGTGACGAGTGGACAGTTCTTCCAAATCCCAATCTTCATCGTGACGTCAATCGTTTCGGACACACAGCAGTTGTCAGTAACGGCTCAATGTACGTTTTTGGTGGTTTCTCTGGTGTGATCCTGAACGATGTTCTGGTGTATAAACCTGCCAACTGTGAGGCCTTCTTTGAGGTGGATCTTTGTCAGAGCTCTGGTCCTGGTGTTCGCTGTGTCTGGATAGAAGAACGCTGTGTACCCTGGGACTCCAGCCATGCTAATGACACCTTGCCTGCCTCCTTCTGCCCTGCACGCACCAATTCAGCTGATAAGCAGTGTCAGCAGTTTTCAGACTGTGCTTCCTGTACGGCCAACACCAATGACTGTCAATGGTGCGAAGACAAGAAATGCATCTCTTCTTCAAGCAACTGCACCGTGCTTACGATTGAGCTTGCCCGCCACCCTCGAGGTCCCCTGTACCTCAACCCTCCCCCCGCAATGCTTTCTGAGCACCAGCTCTCTATTTGGAGACCCGGTGTGCGCAAAAATGGCCAGTCTGTGAAGAACTTTACCAAATGCAGTGTTCGAAGTGAACAGGTTTGCAGCAAACTGGTGAACTGCAGGAGCTGCTCACTGAACATTAACTGTCAGTGGGAACCACAACAGCAGGAGTGTCATGCTTTGCCTGCACATTTGTGCGGAGAGGGTTGGAGTCAGATTGGAGATGCATGCTTGAGGCTGAACGCGAGCAAGGAGAGTTATGATAATGCCCAGCACTACTGTAAGAACCTGGATGGCAACATCGCCTCTCTGACCTCCGCCAGGCAGGTGGACTTCATACTGGATGAGCTGCAGAAGTATCAGATGCAGGAGAAGAAACTAACTCCCTGGGTGGGTCTAAGGAAGATAAATGTTTCATACTGGGGGTGGGAGGACATGTCTCCCTTTACTGCCAGCACGCTGCAGTGGTTACCAGGGGAGCCAAGTGACTCAGGCTTTTGTGCGTACCTGGAAAGAGCTGAGGTAGCCGGACTCAAAGCCAAACCCTGCACTGCCAACACAGAGGGGCTGATCTGTGAGAAGCCAGTTGTGAGCCCAAACCTTAGTGTGCGTCCATGTAAGATTCCCTGCGCCCTGCGAACCAGCTGTGCCAACTGCACCAGCCAGGCCATGGAGTGCATGTGGTGCAGCAGTACCAAGCGCTGTGTGGATTCCAATGCATACGTCATCTCCTTCCCCTACGGCCAGTGCCTGGAGTGGCAAACCGGGGACTGTGGCGCTCAGAACTGCTCAGGGCAACGTACATGCGGTCAGTGCCTGGAGCATCCTGACTGTGGTTGGTGCGGAGACCCTACAGACACAGGTCAGGGTCAGTGTACTGAGGGATCATACCGTGGACCAATGAGGAGCCTGAGCAgacagaacagagagagggTATTGGACACCAGTGTCTGTACAAGAGAAAAGGGCTATAACTGGGCCTACATAACTTGCCCagCATGTCAATGTAATGGCCACAGTACGTGTGTTAATGGGAGTGTGTGCGAGCAGTGCAAGAATCTCACAACTGGGCTGCAGTGTCAGATCTGTCTACCTGGTTACTATGGAGACCCCACCAATGGAGGGAAATGCCAAGCCTGCAGATGTAACAACCAcgctgtcacatctctggactctttTGCTGTGCtgtgtgcccgcgcccgcgtcGCTCCTCCCAGTGCCCGCAATGTCCTCAGTGGCAAAGGGAACttatggatcccagcagccccgcggcttcctcagctcaccatccgcACGCCACGGGACTCCAGCTCAGGGAAATGCTACTGTACCACTAAAGGGGTCAAAGGGGACCAATGCCAGCTATGTGATTCTGAAAATCGCTACCTTGGCAACCCACTTAGAGGAACATGCTACTATAATCTTCTGATAGACTACCAGTTCACTTTTAGTCTGCTTCAAGAAGACGATCAGCACTACACGGCCATTAACTTCATGGCGACTCCAGAAGAGACCAATAAGAACCTCGATATGTCGATTAATGCATCCAACAATTTCAACCTCAACATTACATGGTCTATTGGCTCAACAGCGGGTACGATCTCCGGGGAGGAATTCCCCATAGTGTCCAAGACTAATATCAAAGAGTACAGAGACAGCTTCTCCTGTGAGACATTCTCCTTCCTTGCAAATCCCAACATCACTTTCCATGTTTATGTCAGCAACTTTTCATGGCCGATCAAAATACAGATTTCCTTCTCTCAGCACAGCAGCATCATGGACCTGGTGCagttttttgtcacatttttcaGCTGTTTCCTGTCCCTGCTGCTGGTTGCTGCTGTGGTTTGGAAAGTCAAACAGACGTGCTGGGCATCACGCAGGAGAGAGCAACTAATGCGAGAGCGCCAGCAGATGGCCAGCCGTCCGTTTGCGTCCGTTTCAGTGGCGCTTGAGGCtccagaggaagaggaggagcttCTGCAGGGCCAGGTGGAGGCTAGTCCCATAGCAATGGAGCCATGTTCTGGGAATTGCGCTGCTGTGCAAACATTGCTGATGAGTCTTCCACGGGCATCTTCTGGTTTGCCTCCCCCCGGCCAGTGTGGCATTACCATAGCCAGTGCTCTTATTGATATGTCTCAGCAGAGGGCCGGCGACTTCAAAGACAAGGGCTTGGGTCTAAAGAGCCGTAAACAGCAGCACACGGTGCACCAGGGAACCTGCGTTTGAACCAGCCGCCTGACCTCGCTGGACACACTGATTCTcagctttttttctccttctctctcgttctctgcCACTACAAGGAGATGGTGTTGATGAGCAGGGAGCTCTTGAAGTGTAAATGACAAAGGAGGGTCGAGACATTAGTAGTCCGTGTGTGGCTCCTCCTGAATTGCACGCTCCATAGTGGAGCTCGTATTCCCTCAGTATTGCTTGAACCTCTGTGGAGGACATCTGCATTTTGATTGCACCCACTGGGTTTCTGTTTTCAacagctgtttctctgaaagGGAGGGAGTGTGTAGATGAAACTCACTCGGACCCAAAATAGGAACAAGTTTCAGGCCAGAATTAATCATCTGATCACGCGTGTAGAGGCATTCAGAAGAAGCCTGCCTCTGCTTTCAGGGTTTTGTCTCGTTATTTAGTAAAGTGTCTGTTGATGACTCTTTAATAGACTAATTATCATTAGCTGAGGACTGTATTTGGTACATACTGTATGGTGTTTTGTAATGGTCTTGGTGTGTGGAAAGTGGAATTTTAGAGATTAGATTGGATTCGTCCTAAACTCACGCACTCGACCACGTGGAATTAAAAACTGGGGTTTGAGTTTTAAGTCCGTATATTTTAGATTTGAGGTTGTCTGGATGCTACACTGAAAAGATTTTGGTGTAGGATTCAATTacaaagagcaaaaataaacacactgaatTTAACATGCTTTTGTAAAGTAGAAAGACTGTATAGACTCCAATGATCTAATTAATTagaaaaatcttctttttttttacgctagctaaaattattaaatatattgtcaaattattctatataatattttagcagATATACTCTACCATTCTAGTTTGGAGTGAGTAAGATATGTATACgtaaatgttttaatcagcaagtatgcattaaaggtgacaaaacattgtaaatgtaaCTCCACCGAATTTCGaatacatacttttattttcaactttccattcatccatctttGGGCAAAAGAAAAAGTTTCAGCATTGATAAAGCAGGATTAAGCATGATTAAACATGACATTACATGATTATAATGCAACCTTAGTGAGCATAACAAACTTTTGGAACGGTAGTGTACATATTTAGTTGGTCTTTTTCATCCCGACAACACCTGCTTTTTTTGTCTAGTCCCAGTGAAAATATTCCTGAAGTTCAAACACAGGGTGTTTTGGTAGTGCTGCAGAAAGAGCGTTTACAGTCTTACTACAAATGGCTGACATGTGGTTGTGTGTGCATGACTTAAAAGAAAGTGTATTAATCTTCCAATCCACAgggtttttcagcatcatttgaTTTGCTACGGATTTACCTTATGGAGCTTTATCTGCCATAAACTAGTGCTAGGATCATCAGATACGTGTCGGCAGAGAGTTGAAATGAAGGCTTGAAATAGACCTAAAATATCAGAAGGGTTctgtgggaaaaaaatcattggtttgtgtgtttaatgtcTAGTGTTCACAAAATCATCAGGCTACTATTGCCATTAGTACATACAGTATGTCCATGTCTTAACTCAGTGTTGTTTAACAATAAAGCCAAGAAACACTTACCTGCA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K24332 ATRN; attractin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135661 lncRNA upstream 5156 7096154 ~ 7103522 (+) False LOC122356719
TU135660 lncRNA upstream 5678 7096154 ~ 7103000 (+) True LOC122356719
TU135663 lncRNA upstream 5678 7102167 ~ 7103000 (+) False LOC122356719
TU135662 lncRNA upstream 6090 7096154 ~ 7102588 (+) False LOC122356719
TU135639 lncRNA upstream 61431 7046941 ~ 7047247 (+) True G91594
TU135739 lncRNA downstream 490332 7783640 ~ 7787307 (+) False sh2d4ba
TU135745 lncRNA downstream 516563 7809871 ~ 7810104 (+) True G91673
TU135763 lncRNA downstream 529974 7823282 ~ 7825341 (+) True G91681
XR_006252393.1 lncRNA downstream 815033 8108341 ~ 8111278 (+) True LOC122356873
TU135927 lncRNA downstream 899018 8192326 ~ 8194318 (+) True G91809
XM_043255727.1 mRNA upstream 10750 7093144 ~ 7097928 (+) False LOC122356719
XM_043255726.1 mRNA upstream 10750 7093350 ~ 7097928 (+) False LOC122356719
XM_043254684.1 mRNA upstream 212975 6890513 ~ 6895703 (+) True emx2
XM_043254683.1 mRNA upstream 213949 6890526 ~ 6894729 (+) False emx2
XM_043255490.1 mRNA upstream 222717 6873234 ~ 6885961 (+) True eif3s10
XM_043256416.1 mRNA downstream 72214 7365522 ~ 7471201 (+) False ccdc172
XM_043256413.1 mRNA downstream 72214 7365522 ~ 7394789 (+) False ccdc172
XM_043256414.1 mRNA downstream 72214 7365522 ~ 7372295 (+) True ccdc172
XM_043256270.1 mRNA downstream 184726 7478034 ~ 7721812 (+) True LOC122357079
XM_043256272.1 mRNA downstream 184726 7478034 ~ 7721812 (+) False LOC122357079
TU134595 other upstream 2110782 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2864637 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2864637 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2864637 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 3036779 4071806 ~ 4071899 (+) True trnai-uau_4
TU135767 other downstream 542882 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 565390 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 1013178 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 1372960 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 1445765 8739073 ~ 8740089 (+) False sf3b5

Expression Profile