RNA id: XM_043255897.1


Basic Information

Item Value
RNA id XM_043255897.1
length 1563
RNA type mRNA
GC content 0.48
exon number 10
gene id agpat4
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13686039 ~ 13692349 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCCTTCTCGTCCAGTAGAGGGCGCACTCGCCTTGATAATTGGCGTCGTACAGCCCACGTTTGAGGTGATGTCTTACGGTTGCCAGCGTGTTTGGCAATTACCTTCAACTGCCGGTCGAAGTGAGCAGTGGGAAGCAACCTGTGTAGGGACACTGAGGCAGCGTTGGCTCGAGACAGAGGAAATGACATAATGACCCTCTGAAGTTCCTGCCTACGTTCCAGCGCTCTTCGAGCAGCGTCTTATGCCGGGGTGTGGTCTCATATTCCGCTCACCAGCGCTGGAATCTCTTCTGCCCAACTTAAACATCCTCAAGACTCACATCTCTCGCGCGCTCTCCAGTTAGCTCCATGCGATGAGACGGATCCTCTGCTACTAACCGcgcaaggggaaaaaaagaGGATATAGCGGAGACTGGGGACGTCAAGACTGCATGATAAGGATGGGAATTGTTCAAGTGCTAAAAACTCAGTTGCTGTGCCATCTCATTATCTGTTACGTGTTCCTAGTCAGTGGATTCATTATCAACCTGCTGCAGCTCTGTACTCTACCACTGTGGCCCTTTAACAAGCAGCTCGCACGCAAGATCAACTGCAGATTGGGTTATTCCATTTCTAGCCaACTGGTGGCATTGTTGGAGTGGTGGTCTGGGACAGAATGCACACTTTACACAGATCCAGAAAGCTATAAACTTTATGGCAAAGAGAATGCCATTGTTGTCCTTAATCATAATTTTGAGATCGATTTCATGACAGGCTGGACCTTCTGTGAGAGATTTGGCGTTTTAGGAagCTCAAAGGTGTTGGCAAAGGAACTTTCCTTTGTTCCTGTGATCGGCTGGATGTGGTACTTCCTAGAGATCGTCTTCTGCAAGAGGAAATGGGAAGAGGATCGCAAGACAGTAGTGCAAAGTCTGCACAACCTTCGGGATTACCCAGAAAACTTTTGGTTCCTGTTGCACTGTGAGGGCACACGCTTCACAGAAAAGAAGCACAAGATTAGTATGGAGGTGGCAGAGAAGAAAGGTCTCCCCAAACTCAAGTACCACCTTCTACCTCGGACCAAGGGCTTTTGTGTCACGGTCCAGAACCTCAGAGGAAAAGTTACTGCTGTGTACGATTCTACACTTAATTTCAGAAACAACGAAATGCCAACTTTACTAGGGGTACTCAACGGGAAAAAGTACCATGCTGATTTATATGTGAGGCGAATTCCTCTGGACACGATCCCAGAGGACGAGTCTGAATGTGCCGTCTGGCTTCACAAACTCTACCAGGAAAAGTAAGATGAATTCCAAGAGCATTATAGACAGACAGGGCGTTTTCCGGGTCCCATTACAAGCCCTCCGCGTCGACCTTGGTCCCTGCTGAACTGGCTCTTCTGGGTTTGTTTGCTGGTCTACCCTCTCTGCATGTTACTTCTGCAGTTGCTGCTATCAGGATCCACCTTCACTGTCGTCTGTACATCGCTCTTCTGTCTAGCAGtgtcagTTGGTATCCGCTGGATGATCGGACAGACTGAAATTGACAAGGGTTCCAACTACGAAATAAAGAGATGCAAATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13523 AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138376 lncRNA upstream 338001 13346861 ~ 13348038 (+) True G93512
TU138346 lncRNA upstream 494244 13187585 ~ 13191795 (+) True G93485
TU138317 lncRNA upstream 521726 13164037 ~ 13164313 (+) True G93474
TU138293 lncRNA upstream 527601 13156930 ~ 13158438 (+) False tasp1
TU138058 lncRNA upstream 1083498 12602191 ~ 12602541 (+) True G93306
TU138576 lncRNA downstream 67207 13759556 ~ 13760734 (+) False LOC122356417
TU138574 lncRNA downstream 68703 13761052 ~ 13930287 (+) True G93643
TU138585 lncRNA downstream 169702 13862051 ~ 13862660 (+) True G93649
TU138606 lncRNA downstream 252981 13945330 ~ 13950605 (+) True G93659
TU138607 lncRNA downstream 252981 13945330 ~ 13950605 (+) False G93659
XM_043255059.1 mRNA upstream 7407 13675767 ~ 13678632 (+) False gpr75
XM_043255060.1 mRNA upstream 7407 13676026 ~ 13678632 (+) True gpr75
XM_043255038.1 mRNA upstream 10991 13650908 ~ 13675048 (+) True psme4a
XM_043255040.1 mRNA upstream 10991 13650908 ~ 13675048 (+) False psme4a
XM_043255039.1 mRNA upstream 10991 13650908 ~ 13675048 (+) False psme4a
XM_043255085.1 mRNA downstream 29069 13721418 ~ 13727024 (+) True kcnk1b
XM_043255096.1 mRNA downstream 56786 13749135 ~ 13760422 (+) True LOC122356417
XM_043255899.1 mRNA downstream 106562 13798911 ~ 13801239 (+) True LOC122356827
XM_043255076.1 mRNA downstream 160238 13852587 ~ 13858805 (+) True LOC122356401
XM_043255075.1 mRNA downstream 160245 13852594 ~ 13858805 (+) False LOC122356401
XR_006252431.1 other upstream 469282 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 1097186 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 1110827 12571631 ~ 12575212 (+) True G93296
TU137630 other upstream 2081187 11603697 ~ 11604852 (+) True G92977
TU138522 other downstream 47258 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 661767 14354116 ~ 14367135 (+) False frmd6
XR_006252421.1 other downstream 1414109 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 1562725 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 1603500 15295849 ~ 15314279 (+) False tarbp1

Expression Profile