RNA id: XM_043255913.1


Basic Information

Item Value
RNA id XM_043255913.1
length 2701
RNA type mRNA
GC content 0.41
exon number 12
gene id slc2a15a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24430020 ~ 24441333 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGACGGCCAGTagaaactaactaactaaaccTAACTCGTATTTATCTCAAGAAGCCTTGTAGCATATAAATAACTTGAATATGGCGGAAGAAGTGTTAATACTTGGTCCAGGAAAAATAACATCGCATCTTACCTCATCTCTGCTGGCAGTGGCTTTCCTCACCTCGTTTGGTAGCTCAATGCTTTACGGGTACAACTTAGCTGTGGTCAACTCTCCTGCCGGGTACATTAAAGAGTTCTATAACCGTACAGTGGTAAGCCGCAATGGAACTGGATTGAACGACGAGGCCCTGACGCTCATGTATTCACTCACCGTTTCTGTGTTTGCGATTGGAGGCCTGATCGGCTCTTTGATGGTGGGCACTCTGGTCACCAAATTTGGAAGGAAAGGAACAGTGGTCAACTCCACTGTACTGGTGTTCCTAGCAGGATCACTCATGGGCTTCAGCAGGATCTGTGGTTCACCCGAAATGGTCATCTTTGGTCGTTTTATAACAGGAATACATTCAGGTATCTCTCTCAGCGTTGTGCCCATGTACCTGGGAGAGATCGCGCCGAAAAATCTGAGAGGCTTCCTGGGGCTCATGCCCAGCATTTTCATTTGTGCGGGGGTTTTCTTAGCTCAAGTCTTGGGCCTGCATGAACTTTTGGGAAAGGAAGAGCACTGGCCCCTGTTTCTCTCCCTTGTGGTTGTGCCCACCTTTATCCAGCTGATGCTCTTACCGTGGTTTCCAGAAAGCCCACGCTACCTGTTGATTGAGAAGCACAATGTTCATGCCACTATTACcgCCTTGAAATGGTACAGAGCCAAATGTAACATCCAGGCAGAGATAGAGGAGATGCAAGAGGAGCAACGCTCTCTGTCCTCAGTGGAGACCGTGTCTGTCTGGCAGCTGATTCTGGATCACACTGTTCGCTGGCAGGTCCTGTCCGTGGTGGTTATCAACATCGGTATGCAGCTGTCTGGCATTGATGCGATATGGTTTTACACCAACGACATCTTCGAGAACGCCGGGATCCCGGCGCCCGAGATCCAGTACACGACTGTAGGAACTGGAGCTATAGAGATCGTTGCAGGCCTCATCGGGTGTTTCACCATTGAGCGTCTCGGGCGAAGGCCGTTGATAATCGGAGGCTTTGGTGTTATGGGAATGTGCTGCGCCGGGATTACGCTGTCTCTCATTCTTCAAATACACGTGCCTTTCATGAGATATGTGAGTGTGGGGTGTGTGGTCGGGATCATCGCTGGTTTCTGCATCGGGCCGGCGGGTGTCCCGTTCCTGATCACAGCTGAGCTTTTCAAGCAATCCCATCGTCCCGCAGCATACACCGTGGGAGGATCTCTTAACTGGATGTCCAACTTCACCATCGGCTTTATCTTTCCGTTCCTTCAGATGTCTGCTGGGTCCTACTGCTATCTGGTGTTCTGTACGATATGCGTGTCAGTGGCCATCTACGTGTACTTTGTTATTCcggaaactaaaaataaaacgtttgtAGAGATTAGTCAGATGTTCGCTACGAAAGAGGCTGTGGAAGAGAGCCAGGCCCTCACTCACCCCGATCAGCTCAAACTGAAAAAGATGAATGGATACGGCACGCTTGAAAACGGCTCGCTTGAATTCGACAGTTCTTCTTCCTGTCCTTAAACGcagaagaaaagcaaaaattgCATTAGAGATTGCATTTAGGAATGAGATTAGTTATCAGCCATGCATTAAGAAAGGCACGGTTAAGTGAATCTTACTTTTGCTAACGGAAGGTCTGTTTCTTCTGGTAACAAAACATGAGCTGAAATTAGTTTTCAGAATCAGATTTAGATTTGTAATGatgcttaaacacacacagctttgtGTTACTTTATATACATGAACAGTGCCATATACATGTGCTATTCGTCACGTGTGTGTTATGGAAGAAATTCCTTCATGTATATAGGTCttatacatatttttgtcattataagagtatatatataaatagttgcAATGATCTCTTGcacatattattgtttattatttagtaatgcTCAGGTGCTAATGTAATACTTTATTAGAAACTTAAAAATAGGCAGAGATCaaacttatttgaaatattcctttgcttttttcaaaattgttgttttatttgcagaCATTTTGAACACTGCTACAACTGTAAATATGTAATGGTACATATACACTACTTCAACGTTGCTGGTTTAGTAAGAATATGTTTATTCagcgaggatgcattaaagattttaagttttatatagttttaaatgaatactgtttgcttgaatgttttattaatcaaaaaatgttgaataatacaaatattgagttttcaacatttataataataattttaattgagCACCAATcagcataaaattatttttaaggatCACGTGATGCAGAAGATTGACTGCTGAAAACTAATAATATACTTtccagattttatattttttctgattttatatttttaaaatctaataaacgCAGCCTTAGGAGATAGATCAAAACCATTTATAAGTCTTACCaacccaaaacttttgaatgggaAAGAATAAGGTATAGGTTCCATTCATAGTGTTATCTtgtatattatctatatattatcTGTATGTGATATCTGAGTTTCGATCTAATTTATATGGATATTTATAACTGTATTTGACCTCACatgtactaaaaatattttacgaGTATTCAAACC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142461 lncRNA downstream 85390 24342749 ~ 24344630 (-) True borcs7
TU142460 lncRNA downstream 85390 24342861 ~ 24344630 (-) False borcs7
TU142446 lncRNA downstream 147403 24274695 ~ 24282617 (-) True G96329
TU142371 lncRNA downstream 165103 24264668 ~ 24264917 (-) True G96303
TU142369 lncRNA downstream 179265 24250433 ~ 24250755 (-) True G96301
TU142546 lncRNA upstream 164797 24606130 ~ 24606376 (-) True G96411
TU142551 lncRNA upstream 189220 24630553 ~ 24674087 (-) True G96415
TU142552 lncRNA upstream 190092 24631425 ~ 24675946 (-) False G96415
XR_006252418.1 lncRNA upstream 211594 24652927 ~ 24664925 (-) True LOC122357044
TU142568 lncRNA upstream 213448 24654781 ~ 24664886 (-) False LOC122357044
XM_043254715.1 mRNA downstream 25305 24399126 ~ 24404715 (-) True fgf8a
XM_043255809.1 mRNA downstream 36133 24367927 ~ 24393887 (-) True fbxw4
XM_043255382.1 mRNA downstream 68724 24350847 ~ 24361296 (-) False wbp1la
XM_043255383.1 mRNA downstream 71779 24350847 ~ 24358241 (-) True wbp1la
XM_043255981.1 mRNA downstream 85363 24342860 ~ 24344657 (-) False borcs7
XM_043254739.1 mRNA upstream 162355 24603688 ~ 24620433 (-) True b3gat2
XM_043254555.1 mRNA upstream 225972 24667305 ~ 24672334 (-) False asrgl1
XM_043254554.1 mRNA upstream 225972 24667305 ~ 24672195 (-) True asrgl1
XM_043254579.1 mRNA upstream 400937 24842270 ~ 24845635 (-) True cgasa
XM_043255511.1 mRNA upstream 405116 24846449 ~ 24851300 (-) True eef1a1a
TU142467 other downstream 26376 24399123 ~ 24403644 (-) False fgf8a
TU142459 other downstream 85390 24342861 ~ 24344630 (-) False borcs7
XR_006252429.1 other downstream 159571 24270314 ~ 24270449 (-) True LOC122357144
TU142010 other downstream 1434421 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 1606761 22821981 ~ 22823259 (-) True G96036

Expression Profile