RNA id: XM_043255914.1


Basic Information

Item Value
RNA id XM_043255914.1
length 1495
RNA type mRNA
GC content 0.51
exon number 2
gene id six6a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11635655 ~ 11637883 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAATCTGACAAGTCCAATAGAATATCGGCAGCAGGGgctaaatgttcttttattttgctCGTCAGAAAACACCTTGCTTCCAGTTTTTATGCTCACACTCAATCAAAGAAGAGATTTTCCGTTCGGGCTGCTTGAGCCTGCCGCACGGCATCGCTCCTCAGCTCGTTTTGTGACACGGCTGTTAACTTTTGCCGTTTTCTGACAGACTCGTTGAACAAAAAGACGGGCGAGACAGTCGAGGAGCGACACCAGACAGGGGGACCACAAGGAGAGAGATTGCAGTCTCCATGTTCCAGCTGCCCATCTTGAATTTCAGCCCCCAGCAGGTCGCGGGGGTCTGCGAGACTCTCGAGGAGAGCGGCGACGTGGAGAGGCTCGGCCGCTTCCTCTGGTCGCTCCCGGTGGCGCCGTCCGCCTGCGAAGTCCTCGGGAAGAACGAGTCTGTCCTGCGCGCGCGGGCGGTCGTGGCCTTTCACGCGGGAAACTTCCGCGAGCTCTACCACATACTCGAGAACCACAAATTCACTAAAGACTCACACGCGAAGCTGCAGGCGCTCTGGCTCGAGGCGCACTACCAGGAGGCTGAGAAACTCCGAGGGCGTCCCTTAGGACCCGTGGACAAGTACCGCGTTCGAAAGAAGTTTCCACTGCCTCGGACGATATGGGACGGCGAACAGAAAACGCACTGCTTCAAGGAGAGGACGCGGCATCTCTTGAGAGAGTGGTACCTTCAGGACCCTTACCCGAACCCGAGCAAAAAAAGAGAGCTGGCGCAGGCGACTGGACTCACACCCACACAAGTGGGCAACTGGTTTAAAAACCGGAGGCAGAGAGACCGAGCGGCAGCGGCCAAGAACAGGCTACAGCAGCAGGTTCTGTCCGGTGGCTCGGTCCGATCGCTGGGGGACGATGACACCACAGTGGACCGCCTGGGGCCCGCCTCGAGCCCAGAAGTCAGTCTCTCGAGCAAGGCCGCCACCTCCGCCATCTCCATCACCTCCAGCGACAGTGAATGTGACATCTAAAGTGACAGGCTTCAAAAGAGCAAACGGGAGAACTGTAAGAGACAATCTAACAACAACGACAAAACTTTAGTGCCTGCAACCggcccagagagagagagagagagagcctaaAATGAAggatggaaaaaaatgcatcactaTTTCATTTTCCATTCGTTGATGTGATCAACAAAATGCGCAGTGTTTCTCATAAGGACAGGTGGGAGTTTTCGAAAAAAATCTTCAATGTCTGAGGGCCGAACTTATTGTTGTACGTGTGCGTGCTTTATCATGAAAAGActgaataatgttttaatgttcactcgtcttttttaatatataaacgatgtttatttacttatttaaaatatcatcgGGCCCTAGGCCTTTTATAtgtgtgcttttttattatcatttttgttgtGCGTAATGCTGCGCGTCGTGAAatttctggggaaaaaaaaataaccatgatttaaagaaaataata

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137645 lncRNA upstream 7089 11628359 ~ 11628566 (+) True G92984
TU137626 lncRNA upstream 16843 11566030 ~ 11618812 (+) True G92974
TU137632 lncRNA upstream 31496 11603697 ~ 11604159 (+) False G92977
TU137616 lncRNA upstream 77415 11543053 ~ 11558240 (+) True G92968
TU137594 lncRNA upstream 101725 11514477 ~ 11533930 (+) True G92958
TU137667 lncRNA downstream 89940 11727823 ~ 11728484 (+) True G93001
TU137672 lncRNA downstream 114056 11751939 ~ 11758609 (+) True G93006
TU137801 lncRNA downstream 169145 11807028 ~ 11807246 (+) True G93113
TU137844 lncRNA downstream 439754 12077637 ~ 12079902 (+) True G93153
TU137864 lncRNA downstream 460811 12098694 ~ 12099226 (+) True G93166
XM_043254806.1 mRNA upstream 14179 11606932 ~ 11621476 (+) False ppm1aa
XM_043254807.1 mRNA upstream 17159 11606932 ~ 11618496 (+) True ppm1aa
XM_043254808.1 mRNA upstream 21108 11606933 ~ 11614547 (+) False ppm1aa
XM_043254805.1 mRNA upstream 32977 11594165 ~ 11602678 (+) False pcnx4
XM_043254803.1 mRNA upstream 32977 11594322 ~ 11602678 (+) True pcnx4
XM_043254884.1 mRNA downstream 23704 11661587 ~ 11678612 (+) True mnat1
XM_043254883.1 mRNA downstream 24497 11662380 ~ 11678612 (+) False mnat1
XM_043254882.1 mRNA downstream 43468 11681351 ~ 11690241 (+) True slc38a6
XM_043256083.1 mRNA downstream 56040 11693923 ~ 11708708 (+) True prkcha
XM_043256273.1 mRNA downstream 74555 11712438 ~ 11724360 (+) False hif1aa
TU137630 other upstream 30803 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 31431 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 57796 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 417480 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 420568 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 933748 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 949003 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 1578775 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 2101724 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 2716233 14354116 ~ 14367135 (+) False frmd6

Expression Profile