RNA id: XM_043255917.1


Basic Information

Item Value
RNA id XM_043255917.1
length 1528
RNA type mRNA
GC content 0.46
exon number 12
gene id nusap1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12395781 ~ 12399528 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTTTTCAAACGGCAATCCCACCTAAACAAACCGAGCTGTTTAGATCACAGTGTCGTCAATTTCGGTATCACGTTCATATAAgttatattaagattttttacaCGGAGTTTATCCACAATATGGATTTGGATTCGCTTAAATATGCGGAACTGCAGCGCCTCGCGAAAGAGGTTGGGCTGAAAGCAAATATGAAGGCTGAAAAGCTATTGAAAGCtttaaaagaacactttttCCTACAACAACACCAGACAACTGAAAATGATAATGATGCAGCCGCCGCGGACGGGCACAGTGTCACGGACGAGCAGGGCGGGCACGCGGTAACGTTTGTGACCGAGCGCCGGGGAAAAGGCCGCACTGTCAAGAGAAAGCTCAGTGACCCCACTCCTGTTCCTGCTCAGaaTGAAGTAAAGCCAGCACAAGAGGGCGGCCGAAGGGGCTCCAAAAGGAGGAAGGTGTCCTCACCAAAGGACACGCAGACACCAGTTCCACCTGAAACATCTACTAAAGATCCTGTAGAGAAAGGTCTAGAATCTGTCGAAACAAATCCAGAATCTTTAGGTGCTCCTGCCGAGCCCAGTGTTAAAGGTGTGGGGAGGAGAACAGTGGGTAAAATCCCTCGTCTTGAGGGCCTGATGAAGAGAAAACCTGCACTGCGGCCGACAACTCCTAATTTCAAGAAACTCCATGAGGCTCACTTCAAAAAGATGGAGTCCATTGATTCTTATGTTCAAAGGAAGAATAAACAAATGGAGGTGCTCAGGAATTCTGTCAAAGAGCTGAAGACTCTGTCAGAGAAGACGCTGATGAAATCGGTTGAGGCAAAGACTCAAACTAAGGTGCCTGCTAGCAGAGTCTCTCTCTTCAGTCCTGGAGtgcaggagaaaaaaacattggcaGAAAAGCGCAGGCTCACTCAGCAGTCTGCCAGCAAGTCTGCTTTGAAGGACAGCACCACCTTCAGGCCAACTGTCCTCACAACCAATAAAATCAATGTCCGGTTCTCACAGACCACTCAAGATAACGAATATAAGCGTTCACTGGTAAAGACTCCAGCTCGTATGTCTCCTTTTGTCCCTCTTACCTCCACTCCAGGGAGGAAATCTGATGTTCACACCAAACCTGAACTTAATAAAAGTATTGGCGCCATCAAAACACCCGGAGCTACTccgtttgtttttaatgggaaCAACAGTTTGTCAGTCACCCCTGGCGCCACCAAGAAGAACACATTTGATCTTAAGGCCAGTCTCTCTCGTCCACTCAACTACAAACCACACAAAGGAAAGCTGAAGCCATTTGGAGCTCAACAGGAGAACACAGGACTTAATAAATCTCAGACTGTTCCTTCACACCAGAAAAACTATAAACAGCACCAAGTTCAAACCAGagaggAGCGACGTGCCAAGCAGACAGAAGAccgaaaacaaaagaaagagaagatgtTGGGTGCCAGGCGAGGTCTGGTCATGGCCTAACTCcagtgtttttactgtttgcTATTTTATACACTCACTGTAcatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138098 lncRNA downstream 110727 12278454 ~ 12285054 (-) True vti1b
TU138100 lncRNA downstream 110727 12278567 ~ 12285054 (-) False vti1b
TU138102 lncRNA downstream 110727 12278567 ~ 12285054 (-) False vti1b
XR_006252425.1 lncRNA downstream 215562 12151847 ~ 12180219 (-) False LOC122357111
XR_006252392.1 lncRNA upstream 2143 12401671 ~ 12406892 (-) False LOC122356854
TU138139 lncRNA upstream 2150 12401678 ~ 12406933 (-) True LOC122356854
TU138169 lncRNA upstream 29694 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA upstream 29694 12429222 ~ 12430686 (-) True tmem234
TU138211 lncRNA upstream 132453 12531981 ~ 12533886 (-) True G93392
XM_043255916.1 mRNA downstream 4032 12379697 ~ 12391749 (-) True rtf1
XM_043256218.1 mRNA downstream 16564 12373606 ~ 12379217 (-) False golga5
XM_043256217.1 mRNA downstream 16564 12373606 ~ 12379217 (-) True golga5
XM_043256402.1 mRNA downstream 22790 12354697 ~ 12372991 (-) True trip11
XM_043256403.1 mRNA downstream 44255 12341913 ~ 12351526 (-) True fbln5
XM_043254688.1 mRNA upstream 29669 12429197 ~ 12430778 (-) False tmem234
XM_043254541.1 mRNA upstream 41511 12441039 ~ 12444878 (-) True LOC122356084
XM_043255846.1 mRNA upstream 58343 12457871 ~ 12461979 (-) False btbd6a
XM_043255845.1 mRNA upstream 58343 12457871 ~ 12461000 (-) True btbd6a
XM_043255042.1 mRNA upstream 160630 12560158 ~ 12575184 (-) False rrbp1a
XR_006252352.1 other downstream 596749 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 864472 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1176796 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1460450 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 2205271 10185761 ~ 10190510 (-) False LOC122356841
XR_006252291.1 other upstream 29669 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 157549 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 1164894 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1296544 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1510811 13910339 ~ 13911837 (-) True G93875

Expression Profile