RNA id: XM_043255929.1


Basic Information

Item Value
RNA id XM_043255929.1
length 2189
RNA type mRNA
GC content 0.44
exon number 9
gene id ldlrap1b
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17996931 ~ 18036864 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGTGGCGAGCATGTTCGTACATCCACCCGGGATCATCCGCGGAAAAGGAAGAAAATCACAGGCTGTCAGAAAAGTTTTCCTGCGGGGAGAGGATCGGGCTCGATCGGGCACAGGACCGCCGGGGTATCGAGCTCTCAGGATTATTAATTGTCACAATAAACTGTCTTCATCATGGACGCGCTAAAATCCGCCGGGCGCGCGATCATTCGCAGTCCCAGTCTGGCCAAACAGTCGTGGACCTCTGGAAAACATAAAAaGCTGCCAGAGAACTGGACAGACACGCGGGAGACGCTGCTGGAGGGGATGGTCTTTCAGCTGAAGTATCTGGGCATGACGCTGGTGGAAGAACCCAAAGGAGAAGAGCTCTCAGCCGCCGCCGTCAAGAGAATTGTCTCCACAGCTAAAGCTGGTGGGAAGAAGCTTCAGAAGGTGACGCTGAAGGTGTCTCCTCGAGGGATTATTCTCTATGACAGCGTATCAAACCAGCTAATAGAGAATGTGTCTATATACAGGATATCGTACTGCACGGCGGATAAGATGCACGATAAAGTGTTCGCCTACATCGCTCAGAGTCAGCGCAACGAAACGCTGGAGTGTCACGCGTACCTCTGCACCAAGAGGAaagtgGCTCAGGCGGTGACATTAACGGTGGCTCAGGCTTTCCGCGTGGCTTTTGAGTTTTGGCAGACTGCTAAAGAAGagaaagAGAAGCAGGTGAAGAGTGGATCAGATGGAGAGGCGGCCAGCAGCTCTCAGAGCGAGAGTTCAGCCAGTCTGGGCAGCACCAAAGGAGGAGAGGTGGCCACTGGGGATCTACTGGACCTTGAATGTGGAGTAAAAGATCACTCAGGAAAAGATGCCACACACCCGGCACAGAACCTCAGCACAGAGAACAACAACACTGTCTGGGAACTTGAGGATTGTCTAGATGAGGCTTTCTCAAGACTCGCTGAGTCTCGCACTAACCCCCAGATGCTGGACATTGGGGTAAACCCTCAGGACTACAACCCCGAAGAGTGCTTGTCGCCTAGCAACTGGGACAAAGCCGACGCCGAGGCCGCGGACGCCGAGGACGCGTTCGGGTTCTGACCGGGTTCTGAACGATCTGATAGAACGGCACACAAAGGGAACCGAGCTCGCTGCGCGCCCCACAGGCGCCCTCTGGCGGCCGGCTTTGAGATGACATGCAGTCCCAACCAGATGAATTCAACAAAAGCACAAACCAAAgcaatagtttattattattattattattattattcattttcattttatcaccCCCTCCCTCAAATTACGTTTAAATACATTGACATTTAAAGTGTTCtgttacttaattttttttttttaatgtgtatgattataaaatgtgtatgaCAGCTGTGTAATATTTGctcaattgttattttattattttttaatgggtTCGATTGCCGAGGCGAGCTTTGCGATTCTATGCAGTCTGAATATACAGGCCTATACCGCGGGACCTTGGGGTACTAAGTGACACGATGTTTGAGGCTTGTGTGGAGTTGGATTGTGTTTAAGCGATGAAGTGGTGAAGGTGTTTTATACGCGATAACGACGTGTGATAACGAATGGATGAGCAAACATAAAGCATACAataatggacaaaaaaaaagaaaaagaaatagcaGGGTATTTAAGTATAGacaatcttatttttttctattaaaatgtatttttgcacttctttctgtgtctctttctaaAGCTTGTGGTTTCATTTCAGGATCTTTTTGCTCATGCTTATTGTTCGTTCCTCATCAGGTTACTATTCCCATCCATTAAAGCACTAAGGATGTCACAGTATCATGGTACtactaaatgtgtttaaaaagcaaaaatgtcttACCATGGATGTCCGTGGTATGTTTTTATGGAAATGctgatctttttttataatgttacatgtATTCCTTTGCCCAAAAACATACCTGAATTAATTTTAGGTTGAATGAAAGTGTAGCATATATATTAGGATCATCACGAACAAGCATTGAACTGATGTTTACtgatttgattgaaaataatgCAGATATTTTGTGCTCCACACTGACTCTGTATTAAGGTTTTATTACACTTCATAAGTAGAATTTATAACACCCCAGTGTTAATTTCTGTTTGCATCATTCATTTCACGTTcgttaattaaaactttaatgaaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140025 lncRNA upstream 107030 17889654 ~ 17889901 (+) True G94637
TU139885 lncRNA upstream 751962 17212947 ~ 17244969 (+) True G94543
TU139822 lncRNA upstream 966856 17021864 ~ 17030075 (+) True G94501
TU139823 lncRNA upstream 967331 17021864 ~ 17029600 (+) False G94501
TU139800 lncRNA upstream 1058277 16926914 ~ 16938654 (+) True G94484
TU140151 lncRNA downstream 125113 18161977 ~ 18162280 (+) True G94741
XR_006252355.1 lncRNA downstream 226444 18263308 ~ 18264596 (+) True LOC122356621
TU140164 lncRNA downstream 226660 18263524 ~ 18270603 (+) True G94750
TU140167 lncRNA downstream 336699 18373563 ~ 18375173 (+) True G94753
TU140208 lncRNA downstream 482776 18519640 ~ 18519911 (+) True G94785
XM_043255012.1 mRNA upstream 2793 17980379 ~ 17994138 (+) True maco1b
XM_043255011.1 mRNA upstream 2793 17980393 ~ 17994138 (+) False maco1b
XM_043255016.1 mRNA upstream 23267 17968063 ~ 17973664 (+) True tmem50a
XM_043255018.1 mRNA upstream 30045 17964990 ~ 17966886 (+) True mgst3b
XM_043254561.1 mRNA upstream 44901 17946259 ~ 17952030 (+) True syf2
XM_043254813.1 mRNA downstream 673 18037537 ~ 18043183 (+) True LOC122356284
XM_043256059.1 mRNA downstream 9033 18045897 ~ 18073101 (+) True LOC122356940
XM_043254717.1 mRNA downstream 46638 18083502 ~ 18113478 (+) True olig4
XM_043255689.1 mRNA downstream 82847 18119711 ~ 18126476 (+) True bsdc1
XM_043255690.1 mRNA downstream 82847 18119711 ~ 18126476 (+) False bsdc1
TU139910 other upstream 420993 17560296 ~ 17575938 (+) False G94564
TU139911 other upstream 434683 17560296 ~ 17562248 (+) True G94564
TU139637 other upstream 1391548 16597781 ~ 16605383 (+) True G94378
TU139570 other upstream 1478105 16515827 ~ 16518826 (+) True G94324
TU140175 other downstream 402309 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 500028 18536892 ~ 18537443 (+) True G94789
TU140195 other downstream 508488 18545352 ~ 18631718 (+) False G94776
TU140499 other downstream 1119432 19156296 ~ 19162325 (+) False lhcgr
XR_006252404.1 other downstream 1520285 19557149 ~ 19589504 (+) False foxn2a

Expression Profile