RNA id: XM_043255947.1


Basic Information

Item Value
RNA id XM_043255947.1
length 3227
RNA type mRNA
GC content 0.43
exon number 6
gene id wnt8b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10898368 ~ 10905914 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGGCGGTGCCtgagtttaaacatttatttaaattattgtaaagttAATTGTAGACCTACTTGATTTTAGTTAGCTAAAACCTTTTAgcaattaagtaaatattttttaaattgtattaaaaatctAAACCTGATTACTAAATTACCGatttatagttttgtttatatttcatcCGTTAAAGAATAACATTTGTGGAGTAGCCTACATCTAAATAATTAGACTGCGCGTCGACGGGATCAATCAAGGATAGAGCTATATTCATTTTAGGAACGTTACTTTCAGAGTTTTACGACAGTAGACTATAGGCTAATCTACTCACATTCAAATAGACCAAACGGGGGATTTAGAAATGAATTTGGAAATCTCTTTATAGTGGCAAATTCGTTTTACTTCAGACCCGTAGAAGCCTTTCAGGACCTAATCCAAAAACATCCCTCTGGAATCTCCCAAATAACTTTCCTAATCCTAATTTGCACACGAGAAGATACGCGGACGTCAAAGAAGCAGAACCTAAAGGTCATGAAGGGTCAGCTAAAGACTAAACTGAGAGAAAAGGTAAAATAACACTCGTGAAAAAACGCAAACACGCAATCGTATCGATTATCCTCCTTATCTACGTTAATTCCCGCTGTTTATTTGAATCTCTTAATTCAACTCCTAGAGAGCATGGATTTAACTTCGATGCGTCGCTTGAACTCGTAGCCCAGTATATTGAACAGAATCggcaaaaataagacaaaaagggACGTACGCATTACTTttgtaattctgtttttattctagTAGATGTTTAAAAACTAGCTGTTTTCGTTTAATCAAATCAGTTAGCCTTTCTAAAACGCATTTAAACGTAGACTACTCGAGCAGATCCTTAATATCGCTAAACTGAATCTAACGTGCTCTTAAACCTGTAAGTTCGCTCTATCCGAACGCTACAAATAACATTTGTCGTTTGATCCAGAAGATAATGTCAGTAATCCCTGCGCTTTATCAGCCACTACTGTATCAAACCCTTTCATGCTGCTCCTGAAATTGAGTTTTAAGGCACAACCTTAGAGATGCCATCCTGATTTCATATTAATTCACTCCAACTGTTAGCACGCAGGGAGCTCTTCCCAGCTATTTGTCCCGGAGGAGCCCAGGGTGCCCTTTTGATCATTTCAATCTCTCTCTGGTACAAtagttctgattggctgaacgAGTAAGAAAAGGGAAAATCTTTAATTAAGCAGATAATCTCTTGTTGGGATGAGAGGAGCTCCATTTCAGAACCCCCTTGGCTCACACATGAGACCCCCAGCCTCTGAATTCTGGATGTAGGTTATATAGAGCTCTTGCAGACCCCTCTGCTTTCCAAGGTGAAGAAAAGTCTGCCAGTCGCCTCTCTCAGGATGTTCATGCATTTGGAGGTTTATTATTACGCTTTCATCTTGATAGCTCACATGAAGTCTTGCTGCAGTTGGTCAGTGAATAATTTCCTGATGACTGGCCCAAAGGCCTACTTGATCTACTCCAGCAGTGTGGCCGCAGGAGCTCAAAGTGGGATTGAAGAGTGCAAGTATCAGTTTGCGTGGGACCGCTGGAACTGCCCGGAGAGGGCTCTTCAGCTCTCCACCCACAGTGGACTCAGAAGCGCAAACCGAGAGACAGCGTTTTTCCATGCCATCAGCTCTGCTGGAGTCATGTATACCCTCACCAGGAATTGCAGCCTCGGTGACTTTGACAACTGTGGATGTGATGACACCAGGAACGGCCAACGAGGTGGTCAGGGATGGCTCTGGGGAGGCTGCAGCGATAATGTTGGATTTGGAGAGGCCATCTCCAAGCAGTTTGTGGACGCACTGGAAACCGGACAGGATGCGAGAGCCGCCATGAACCTGCACAACAACGAAGTGGGACGCAAGGCAGTGAAAGGAACCATGCAGAGGACGTGCAAGTGCCATGGAGTGTCTGGCAGCTGCACCACTCAGACCTGCTGGCTGCAGTTGCCCGAGTTTCGAGAGGTGGGCAACTACCTAAAAGAGAAATATCACAGGGCCGTGAAGGTGGACCTGTTGCGTGGCGCAGGCAACAGCGCCGCCAGCCGCGGTGCGATCGCCGAGACCTTCAGCTCAATCTCGCGCAAAGAGCTGGTGCACTTGGAGGATTCCCCAGACTACTGCTTGGAGAACCGTACTCTGGGCTTGCCGGGAACAGAGGGCCGCGAGTGCTTGAGGAAGGGCAAGAATCTGAGCAAATGGGAGAAGCGGAGCTGCAAGCGGCTTTGCGGAGAGTGCGGTCTGGCTGTGGAGGAACGGAGGGCTGAGACCGTGTCCAGCTGCAACTGCAAATTCCACTGGTGTTGCGCTGTCAAATGCGAGCAGTGCCGCAAAACTGTCACAAAGTACTACTGTGTGAAGAGAACCAAACGGGTCAAGAACGACAGTGCCAGCCGTAGGAAAAGCTATCGGTTAAAGAAGAAGCACTAGAGATGCCATGAACTGTTTGTTGGTCTCAGAATACATCCTGAGCTTGAGAATGAAGTGAGCTCAAAGGTCCATCTGAATGCTTTAATGAACACCTACACTCTTTCAAATAAAGGTTCTTAATTGGCGTCTGTGGTTCCATGAAGCACCTTTAACATACATGGAACCTCaccatttcatatttaaaatgtacttcatACCATCAAGAttggttcttttaaaaacttgttactgaaaggttctttggagAACCAAAATgattcttctatggcattggaacctttatatttaagaatGTAGATCTCCAGAGCTGTTTGAATGCATTGATCTCTAGTATTTCACGTAAGCATTTCACAATTATTCCCGTATACTTTTGTAAGATAGCACTGAACACAGCATCTAACGATATATAGCACAATAGACTGTAAATAACCTTTTCATTCACCAACAAGGATGTACTTTGATGGATAATTTATtggaattatcatttttaaatgggttttgGATTCATTGTTGGGCCACTTCTCCAGCTGCCATGAGAATCATTTCTTGCCTTTTTTTCCTTGTCTGTTTCCGTCTGTTTTAGAATTCTGACAGTACCTTTTTACCCTGATACTGTATATGAACTGTAAATAAGAGAAAGCACTTTgtatattgttaatttattgcaCAGATACTATAGTGCTGTTTTTCTATGATAGTTTCTTCCTATGTttctatgtgtttttttcaatttcataatTAAAGATACGTAATAGTT

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060898 eye field cell fate commitment involved in camera-type eye formation biological_process
GO:0021854 hypothalamus development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0043049 otic placode formation biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0022002 negative regulation of anterior neural cell fate commitment of the neural plate by Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00714 WNT8; wingless-type MMTV integration site family, member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252378.1 lncRNA downstream 98504 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 98504 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 102399 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 110864 10784852 ~ 10787504 (-) True LOC122356898
TU137350 lncRNA downstream 113673 10784373 ~ 10784695 (-) True G92788
TU137407 lncRNA upstream 39290 10945204 ~ 10947731 (-) True G92829
TU137414 lncRNA upstream 70619 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 80388 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 82500 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 83368 10989282 ~ 10991734 (-) False G92841
XM_043255558.1 mRNA downstream 4416 10886804 ~ 10893952 (-) True hif1an
XM_043256242.1 mRNA downstream 196271 10669026 ~ 10702097 (-) False cdhr1a
XM_043256243.1 mRNA downstream 196271 10670310 ~ 10702097 (-) False cdhr1a
XM_043256245.1 mRNA downstream 218546 10669026 ~ 10679822 (-) True cdhr1a
XM_043254506.1 mRNA downstream 239459 10651830 ~ 10658909 (-) True rgra
XM_043255949.1 mRNA upstream 141 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA upstream 141 10906055 ~ 10911827 (-) False scdb
XM_043254603.1 mRNA upstream 7136 10913050 ~ 10914756 (-) True trmt2b
XM_043255464.1 mRNA upstream 45537 10951451 ~ 10955143 (-) True tysnd1
XM_043255468.1 mRNA upstream 49524 10955438 ~ 10958617 (-) True sar1ab
TU136940 other downstream 707858 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1782817 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2850467 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3763226 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 3767153 7131145 ~ 7131215 (-) True trnag-gcc_67
TU137394 other upstream 19030 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 295032 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 620266 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 865514 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1523283 12429197 ~ 12430778 (-) False tmem234

Expression Profile