RNA id: XM_043255949.1


Basic Information

Item Value
RNA id XM_043255949.1
length 2904
RNA type mRNA
GC content 0.39
exon number 6
gene id scdb
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10906055 ~ 10911829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGTCCACAACATAAGCATCAGATAACCAGGCAACCAATGAAACTGGTAGGGCTAGATGGCATCCTCTCAGCCTCGCCCAATTGCATCATTTTAAACGAAATCAGAGGCTTAGAGacgcaaaaaataaaaaattaaatcactcGACGGGGAACCTGCCTGCTAGCATCAATCAAATCGCGATCATTCTTTATGGTTGCATCGCAGACAAGGTAAGCGCGGCGCGGAGGAGCGAACGCGGCTTTATTCCGGCGTACCTTTGAGACAGAAGTCGCGCCCATTTGTGCAGAAATTGAACGTGCTGATTGAGACAATAACGAGCATGAAAGAAATGGCCGAAGCGACGACGACAGAGGACGTTTATGATGATGCTTACGAGGAGAAACCGGGCCCGAGTCCTCCGGTGAAAATCGTATGGAGAAACGTTATATTAATGTCTCTTTTGCACCTAGGAGCTCTTTACGGTCTGATGATTTTTCCATCCGTCTCGTCCTTAACGCTGATATGGACGGGAGTGTGTTTCATGCTAAGCGCTCTAGGAATAACCGCCGGCGCCCATCGCCTTTGGAGCCACAGGTCTTACAAAGCCTCGCTGCCGTTACGAATCTTCCTAGCAATCGCAAACTCCATGGCTTTTCAGAATGATATCTATGAGTGGGCCAGAGACCATCGTGTCCATCACAAGTTTTCAGAGACTCATGCGGACCCACACAATGCCCGCAGAGGATTCTTCTTTGCTCACATCGGCTGGCTGCTGGTCCGCAAACACCCAGAAGTTATTGAGAAAGGACGCAAACTAGAGCTCACTGATCTAAAAGCGGATGGGGTTGTGATGTTTCAGAGGAGGCATTACAAGTTATCCGTGGTTGTGATGTGCTTTCTCATTCCCACATTTGTACCTTGGTTCTTTTGGGAAGAGAGTCTTTTGACCGGTTACTTAGTTCCTTGCCTGTTGAGATACACTGTGTGCCTTAATGCGACCTGGCTGGTCAACAGTGCAGCTCACATGTGGGGAATGAGGCCTTATGACCACAACATCAATCCCAGAGAGAACAAGTTTGTCGCCTTCAGCGCCATCGGTGAAGGATTTCACAACTATCATCACACATTCCCCCATGATTACGCTGCAAGCGAGTTTGGCAGTCGGCTGAATCTGACCAAGGCATTTATAGATCTCATGTGCTTCTTTGGACTGGCCAAGGATTGCAGGAGGGTAACTCATGAGACTATCATAGCCCGCGTTCAACGCACCGGCGATGGCAGCCACAAAAGTGGTTGATTTATTCAGTgtatatgacaaaaaaacaaagaaacaaaaaaaattataaggcAACGTATACAAAAGCATTTGCAGCATTTCTTAGTGTGCAACGAAGATTGATCTATATACACTCTCATATGAAATAAGAAACTCTAGAGTGTGTTGGACTAATATGTGTTCTTAAGAATTCTTTCCTTTTCATGACATGTTCCGGACTGCGGGAGATTATTTTCAGAGATGGTAAAGGCCATAGATTGGGAGGATAATTATATCTCAGTCTGCCTCAAGAGGCAAGAGATGGTACTTCACTAGTTTAAACAGCCATGTGCCTCATTACAGCCCTCTCTCATGAACAGGTTGACCCATGTTTTCTCTGGCTAAGCAGTTGCTGCTATGGTTCTATACAAGCTGTAAAAATAAGATGACACGCTAATAACACACTGGCactattttagattttcttaaaagataaaagctttttttccatttgaaactgggaaaaaaaattaacgaccaccaaaaaagttatttatagcaTATATAGTCAAAGAAGACTGTGCCATAGAAAAGTCCACGGGAAAACTGGTCTCAGTTGACCTAAAATGTTGACGTATATAACTCTGGTTAGTTCTGTTTAGAATAGGTTTGTTAGTAGTGACAGTATACATCAAAATACATTGCCATTattgatcaaaatatttaaaattaattttaattattatttaattttatttttagtctatATGCCTGCAAAGGTCATCAGATTAGTGACTCTTGTAATGAGGAGTGAGCAATTcatcaataaaatgaatttcttaattattattttccatgttGCATAGTGCTCTATCAAGTTTCCTTGGACTCTTGTGGTCCTGTAAAAAAAGTACCTGTCAAAATGACCAGGTAGGCCTATACggtaaacttttttaattacaaatatattgaaGTATGAAAGGATTTTTTCaagtattataaaacatatttaaccaaaaacattttgaaaaaaaatttgtcTGTTGGGGTAAAAGTGTTAAGGTGTACACTTACTAGGACATTTATTTGTCCTCATGATATAATCCAAGGATTGGAATATTCAAATGTCTTCATCAGATAGAATCTTGCCCTTTGCCTTATAAAAtaggcctctctctctctatatatatatatacagattttgGGTTGGACTCAAAATTGAAAACACAAAGATGATGTATAGCATCAgaaaaattaattcaaacttATAAAGTTTTAAGTCATTCAGGGTGGGCTGTTTTCTTGGCTCTTCTGTGACGAATGAATGACCATCTGTAGCTCcctatatttttttctcataaatgtTTGATAGGTTGATATTGGTacgcattttccaaaaaaaaaaaaagccaaatgctttatatatttaaaacccaTGTTTAAGAAGAAACACAAACTGACACTACGTTTTTCAGCttaattatttatacagtgtTGACCTTTGATGTCTGGGAGCCTTAATGGGCACATTTTCAAGGAATGTTGTTTCATGTACCATAAACCAAAATTTCTATAAGTGGAAGAGTTTTGCGAGTTGTACCGTGAGTTTTGTTATGAATCAATATTAATCTTTTtcttaattgaataaaatgtgtgtatatctgAAAA

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004768 stearoyl-CoA 9-desaturase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00507 SCD, desC; stearoyl-CoA desaturase (Delta-9 desaturase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252378.1 lncRNA downstream 106191 10787586 ~ 10799864 (-) False LOC122356733
XR_006252376.1 lncRNA downstream 106191 10787586 ~ 10799864 (-) False LOC122356733
XR_006252377.1 lncRNA downstream 110086 10787586 ~ 10795969 (-) True LOC122356733
XR_006252397.1 lncRNA downstream 118551 10784852 ~ 10787504 (-) True LOC122356898
TU137350 lncRNA downstream 121360 10784373 ~ 10784695 (-) True G92788
TU137407 lncRNA upstream 33375 10945204 ~ 10947731 (-) True G92829
TU137414 lncRNA upstream 64704 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 74473 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 76585 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 77453 10989282 ~ 10991734 (-) False G92841
XM_043255947.1 mRNA downstream 141 10898368 ~ 10905914 (-) True wnt8b
XM_043255558.1 mRNA downstream 12103 10886804 ~ 10893952 (-) True hif1an
XM_043256242.1 mRNA downstream 203958 10669026 ~ 10702097 (-) False cdhr1a
XM_043256243.1 mRNA downstream 203958 10670310 ~ 10702097 (-) False cdhr1a
XM_043256245.1 mRNA downstream 226233 10669026 ~ 10679822 (-) True cdhr1a
XM_043254603.1 mRNA upstream 1221 10913050 ~ 10914756 (-) True trmt2b
XM_043255464.1 mRNA upstream 39622 10951451 ~ 10955143 (-) True tysnd1
XM_043255468.1 mRNA upstream 43609 10955438 ~ 10958617 (-) True sar1ab
XM_043255467.1 mRNA upstream 47612 10959441 ~ 10964398 (-) True ppa1b
XM_043255007.1 mRNA upstream 241762 11153591 ~ 11185986 (-) True zcchc24
TU136940 other downstream 715545 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1790504 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2858154 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3770913 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 3774840 7131145 ~ 7131215 (-) True trnag-gcc_67
TU137394 other upstream 13115 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 289117 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 614351 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 859599 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1517368 12429197 ~ 12430778 (-) False tmem234

Expression Profile