RNA id: XM_043255988.1


Basic Information

Item Value
RNA id XM_043255988.1
length 842
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC122356894
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 147154 ~ 149377 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTCATGGAATGTTTTGGTCGTCCACTTTGATTAAATCAGAAGCACGGGAAGCGGAAAGCGCCAGAGAGTTACACAAATCTTTATGCTTGTTTACTGACGCACGGGCGAGGGaggggacttttattttaaaatcacccACCATGTCAAAGATGTGCTAAAGGTCCGTGCTGTCGCTGAGGACAGCGGAGAAACTGTACTCGTCAATACCTCGACGATGAATGTAAAAACAGCTCGTCGCTTAATACTGAGGTCTCTGCGTCCGTGTTATACGCCCGCTCGTCGGGGTCATCGACAAAGCGCGAGCCAACCTCCAAAACATGCCACGCGAGCAGAGAGGACTGGATTCAGTCCAGCATCAACATCAAAATATGACTGGATCGGTCCAGCAGACAGACTGTCAAACCTGAGGCCCATCATCTATCACATCCCCGAGAACGAGACGGCCCTGGAGAGGAGGCTGAGGCGCCTGAGACAGGAGACTGAAGACTGGAACCACGAGTTCTGGGCCGAGCAGAACCTCACATTCAGCCAGGAAAAGGAGGAATATGTGAGATCGCGACTGTCGTCAAATGGGCTGTCAGAGAGAGATGATGATGGAAGGAAAAGGACTTTAAGCAGTGAGGAGATGGCAGTATTTTACAAACACTTTTTAGACAAAAACGTTACAAGGCATGCCACTTATAACAGGGAATGGTACAGAAGGAACTTCACCATTACTCTTCTGATGGCAAAAGTAGCTCTCCACAACACATGGAGCACACTGACCGGACAGACCAGAGGACCCGGCCGGGAGAAAGGCAACACTACATGACACGCAAATAAAGACTGTAAAACAGTTAA

Function

GO: NA

KEGG:

id description
K23506 APOPT1; apoptogenic protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132445 lncRNA upstream 37489 108154 ~ 109665 (+) True G89504
TU132436 lncRNA upstream 41996 36978 ~ 105158 (+) True G89496
TU132477 lncRNA downstream 74672 224049 ~ 224290 (+) True G89526
TU132478 lncRNA downstream 75137 224514 ~ 224746 (+) True G89527
TU132650 lncRNA downstream 227980 377357 ~ 378829 (+) True G89627
TU132653 lncRNA downstream 230735 380112 ~ 380411 (+) True G89630
TU132675 lncRNA downstream 349885 499262 ~ 504906 (+) True G89635
XM_043255709.1 mRNA upstream 25673 110945 ~ 121481 (+) True trmt61a
XM_043255646.1 mRNA downstream 1062 150439 ~ 183438 (+) False klc1a
XM_043255645.1 mRNA downstream 1063 150440 ~ 183438 (+) True klc1a
XM_043255648.1 mRNA downstream 1063 150440 ~ 183438 (+) False klc1a
XM_043255647.1 mRNA downstream 1064 150441 ~ 183438 (+) False klc1a
XM_043255649.1 mRNA downstream 1066 150443 ~ 177326 (+) False klc1a
XR_006252363.1 other downstream 1064 150441 ~ 180214 (+) False klc1a
XR_006252364.1 other downstream 1064 150441 ~ 180214 (+) False klc1a
XR_006252308.1 other downstream 41420 190797 ~ 236893 (+) False fignl1
XR_006252307.1 other downstream 41420 190797 ~ 227656 (+) False fignl1
XR_006252315.1 other downstream 174360 323737 ~ 376571 (+) False dlg5a

Expression Profile