Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043255994.1 |
| length | 1308 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 7 |
| gene id | ube2d3 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_056711.1 |
| NCBI id | CM032080.1 |
| chromosome length | 25085836 |
| location | 6160378 ~ 6165669 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0061418 | regulation of transcription from RNA polymerase II promoter in response to hypoxia | biological_process |
| GO:0035666 | TRIF-dependent toll-like receptor signaling pathway | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0070936 | protein K48-linked ubiquitination | biological_process |
| GO:0034138 | toll-like receptor 3 signaling pathway | biological_process |
| GO:0034142 | toll-like receptor 4 signaling pathway | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU135152 | lncRNA | upstream | 158318 | 5998442 ~ 6002062 (+) | True | G91250 |
| TU135142 | lncRNA | upstream | 173401 | 5985544 ~ 5986979 (+) | False | commd8 |
| TU135036 | lncRNA | upstream | 203782 | 5954891 ~ 5956598 (+) | True | G91172 |
| TU135032 | lncRNA | upstream | 207863 | 5951230 ~ 5952517 (+) | True | lamtor3 |
| TU135046 | lncRNA | upstream | 232247 | 5927834 ~ 5928133 (+) | True | G91180 |
| TU135249 | lncRNA | downstream | 88934 | 6254603 ~ 6261915 (+) | True | akt3a |
| TU135252 | lncRNA | downstream | 88934 | 6254603 ~ 6358016 (+) | False | akt3a |
| TU135248 | lncRNA | downstream | 113890 | 6279559 ~ 6291443 (+) | False | akt3a |
| TU135268 | lncRNA | downstream | 204541 | 6370210 ~ 6370528 (+) | True | G91324 |
| TU135295 | lncRNA | downstream | 287075 | 6452744 ~ 6453076 (+) | True | G91343 |
| XM_043256102.1 | mRNA | upstream | 1067 | 6152743 ~ 6159313 (+) | True | zmp:0000000662 |
| XM_043256103.1 | mRNA | upstream | 1067 | 6152743 ~ 6159313 (+) | False | zmp:0000000662 |
| XM_043255890.1 | mRNA | upstream | 52604 | 6104126 ~ 6107776 (+) | True | arl3a |
| XM_043255891.1 | mRNA | upstream | 52604 | 6104126 ~ 6107776 (+) | False | arl3a |
| XM_043255892.1 | mRNA | upstream | 56394 | 6101631 ~ 6103986 (+) | True | npm3 |
| XM_043255613.1 | mRNA | downstream | 833 | 6166502 ~ 6172576 (+) | False | manba |
| XM_043255612.1 | mRNA | downstream | 840 | 6166509 ~ 6173714 (+) | True | manba |
| XM_043255614.1 | mRNA | downstream | 8645 | 6174314 ~ 6179659 (+) | True | slc39a8 |
| XM_043255615.1 | mRNA | downstream | 8645 | 6174314 ~ 6179659 (+) | False | slc39a8 |
| XM_043255616.1 | mRNA | downstream | 8645 | 6174314 ~ 6178776 (+) | False | slc39a8 |
| TU134595 | other | upstream | 1162484 | 4992327 ~ 4997896 (+) | False | si:ch73-49p17.1 |
| TU134239 | other | upstream | 1916339 | 4182499 ~ 4244041 (+) | False | G90660 |
| TU134245 | other | upstream | 1916339 | 4182499 ~ 4244041 (+) | False | G90660 |
| TU134242 | other | upstream | 1916339 | 4241132 ~ 4244041 (+) | True | G90660 |
| unassigned_transcript_1924 | other | upstream | 2088481 | 4071806 ~ 4071899 (+) | True | trnai-uau_4 |
| unassigned_transcript_1926 | other | downstream | 965757 | 7131426 ~ 7131496 (+) | True | trnag-gcc_68 |
| TU135767 | other | downstream | 1670521 | 7836190 ~ 7838941 (+) | False | chchd1 |
| XR_006252298.1 | other | downstream | 1693029 | 7858698 ~ 7881483 (+) | False | zswim8 |
| TU135961 | other | downstream | 2140817 | 8306486 ~ 8310824 (+) | True | G91833 |
| XR_006252358.1 | other | downstream | 2500599 | 8666268 ~ 8683052 (+) | False | pcnx2 |
