RNA id: XM_043255997.1


Basic Information

Item Value
RNA id XM_043255997.1
length 2046
RNA type mRNA
GC content 0.40
exon number 8
gene id tspan15
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8343096 ~ 8361457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCGTGCTCTGCTCGCTCAGGTAGAAGATACAAACAAACCAGGAAGTGTCTCCTACGCGTACGCCTTTCGTGTCATTTATacgtttaaaaaatgtcaaatgaagTGCGATATTGCGACAGGTGCTCGTACCTCTTTCTCAAGTTCTCGTTAATCGTATATGCAACCATTTTCTGGCTCATAGGGGGCTTTATTTTGGCCATCGGCATTTATGCGGAGGTGGAGAGGCAACAGTACAAAACTCTGGAAGGAGTATTCCTGGCTCCTGCCATTATCCTCATCGTGCTTGGTGTGATCATGTTCATCGTCTCCTTCATCGGTGTTCTTGCATCTCTCAGAGACAACTTGTGCCTTCTCAAAGTGTTTCTTTACATGCTGGCTCTCTGTCTCATTTTGGAGCTGGTCAGTGGGATTCTTGCTTTGATCTTTAGGAGACAGACAGAAGACCTTCTCAACAAAAACATCCGTAAAGGCATGGTCAACTACTATGATGACCTCGATTTCAAAAACATCATGGACTTTGTTCAGAAAAATttCAAATGTTGTGGGGGAAATGACTTCATGGACTGGCAGGTGAACATGTATCATAACTGCTCTGCTCCTGGTCCTCTAGCGTGTGCGGTTCCTTACACCTGTTGTCTGAGCAAGCCTTCAGAAGTTGTTAATACTTTATGTGGACACAAGGCCCTGGAAAGAGAGAGGCTACAAAATATAGATGTGATCTACACCCGTGGTTGCACCAATGCCGTCTTCATTTGGTTCATGGACAATTATAAAATCATGGCTGGACTTCTTCTGGGCATCTTAGTTCCTCAGttttttggtgtGATCTTTACCTGGCTTTATATCACCCGTGTGGAAGATGCCATCGAGGAGTATGGACACTATATGGACGGTCTGCTTGACAGCGGATCCCCAGAGACCAAGTATCAAAGCAAGTGGGCCAAATGCTGCAAATGCATGCCTTTAATTGACTGAGTGAAAACTCAGAGCCTTACATTGGAAGGAAAAAAGGGATCTATACAGGTACTATCATGTGCTGTGGATGAAACGAACCATTTGTAGCTCTGCAAAACTCAACCGCGCGTTACTTTTGTAATATCAGCCGCAGAAACACTGATGCGAGCAATTTTTGCACTGTCAATATCCTTTTCACAGTTACTCCCAGGAATCATTATTTCATCCGTCAGCTGaaaatgggtgttttttttgtgtcaagATTTACTGATGCCAGGACTGGCCTTCTTTCTCAGTACTAAATCAGATCTGAGGCAGTACACTAAGGCTGCGTCATGTTGACGGAGTCAGAATGCCTTTAGATTTTACACAGCTTAGTTGCGTTTAACAGGGAAACTGATTTGAAAATTGGCACCCTGTCGGTCTCAGGTATACAattcaggggttttttttcacattagtGAACTTCTAAATCAGTAAAAACGGCAGCTACTTTGATTATAATAACGCTGTTTCCTTTGCCACATTGTGTCTAAAATGGGCAACAGTATAAAGCCTGACTCtaacacatttaaaagctgTGTAAATCCAATCTTTTAGTTcgcaatctttttttaatttgataattgttttaattcagaTGGAGTCTGAAATGGGTTGTATCTCTTAATTTTAATGCTACATATTTCTATCCGAGAAAGTGTTTTTCCCTTTCTTGTTTGCCAAAAGGTGATGGGTTTTTATATTATCCTCTATTCTGTTGTCTGCTGTGTCTTTATTAAGCATGAACACAAGTTAACTGCATATCTTGAcctgtttttgtaataaatacgATATTTCCTGTCATTTAATGGTAGTAGAAGCATCTGatggcatatttatttaaatgcgcAAAATATTGCATTCGTATGTCATTTTGAGTGAAAGATAATTACAAACAAGCAGGGTGAAgtgaataataacatttaagccttaactctttttttttcagtttttcaatgACTATATCTTGATCTGACTGTTAAAGCTGAGTATTGCCCTGAACACAGTGAGCGTCctgctgaatgaatgaataaatgatgtttaCAGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17297 TSPAN15; tetraspanin-15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136081 lncRNA downstream 75023 8267766 ~ 8268073 (-) True G91916
TU136047 lncRNA downstream 120481 8168737 ~ 8222615 (-) True G91891
TU136044 lncRNA downstream 175164 8157258 ~ 8167932 (-) True G91889
TU135912 lncRNA downstream 211248 8131243 ~ 8131848 (-) True G91796
TU135882 lncRNA downstream 301878 7997680 ~ 8041218 (-) True G91769
TU136169 lncRNA upstream 73572 8435026 ~ 8435920 (-) True G91960
TU136183 lncRNA upstream 103627 8465081 ~ 8468983 (-) True G91967
TU136184 lncRNA upstream 107818 8469272 ~ 8471302 (-) True G91968
TU136224 lncRNA upstream 229904 8591358 ~ 8592574 (-) True G92004
TU136251 lncRNA upstream 306042 8667496 ~ 8678386 (-) True G92021
XM_043255656.1 mRNA downstream 6060 8324645 ~ 8337036 (-) False rufy2
XM_043255655.1 mRNA downstream 7031 8324645 ~ 8336065 (-) True rufy2
XM_043255657.1 mRNA downstream 7035 8329124 ~ 8336061 (-) False rufy2
XM_043255664.1 mRNA downstream 24281 8315189 ~ 8318815 (-) True LOC122356684
XM_043255662.1 mRNA downstream 28272 8309437 ~ 8314824 (-) True LOC122356681
XM_043254678.1 mRNA upstream 7483 8368937 ~ 8381953 (-) True hk1
XM_043254677.1 mRNA upstream 25592 8387046 ~ 8396309 (-) True hkdc1
XM_043254679.1 mRNA upstream 35425 8396879 ~ 8402518 (-) True supv3l1
XM_043255977.1 mRNA upstream 41714 8403168 ~ 8408645 (-) True vps26a
XM_043256247.1 mRNA upstream 48554 8410008 ~ 8413812 (-) True srgn
TU135889 other downstream 295195 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 1207954 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 1211881 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 1952381 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 2117363 6225261 ~ 6225733 (-) False LOC122356805
TU136576 other upstream 753639 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 1824307 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2563490 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 2839492 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 3164726 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile