RNA id: XM_043256032.1


Basic Information

Item Value
RNA id XM_043256032.1
length 5446
RNA type mRNA
GC content 0.47
exon number 17
gene id phf3
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14620165 ~ 14630849 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTTGCTGGCTCAGAGGGTCAACAGGAAGTACTACTTGTGTCCCACCGCAGTTCTCAAGCGGAAAAGGTTGTGGCATTAACGACAACCCGTATGGCGTCCAAACAACGTAAACGATAATACAAGCCATTCTCCCATTATGCGCTGGCTCTTCGATCACAGTGACGAACGCGAGCAAACCATACAGTGCAGGCATTCATGGATATAGTTGGTGGTCCATTCAATCATCTGGTTCCCAGCGACCAGTTGGATGATTCCTTACTGCTCGGACAAAACCTGGAGTGTGAAGCTAGTGATGACTTTGAAGCGGGCAACGACCAACCCGAAGATTCTCTGAAGAACATGCTCAGCGACAAAGATCCCATGTTCGGGTCTGCTAGCACCCAGtttcatattttagaaaatgaagATGTCAGTTTTAAGATTGGGAGCTCAACAGCTGCAGATCATGACATGACAACGGCAGGTGTTAGTCAGAGTCCATCTGATGGAGAAAGCGGTCAGTCCGGCTTCCCGCAGGGCAGAAGACATTTACAGAGGAGACAAACAGcaAGCCGCGGTCGAGTTAAAGGCAGGCGCCCAGGTCCTGCGCGAAAAGCAGCTGAGAATAACAAGCAAGAGTCAACATGTAGCAAAAACCCAGGTGGAGATAAAAGCCGTGATGCAAAAAGGGAAGCCCTGCTCAGCCGTCGTTTTGGAGTCCACGAAGTTGACTCCTCTATGAATCCAGTAGTTGTGTTACGTCGATTAACTGTTACTGTGGGGGGTTATAAAATAGAACTGCTTCCTGGCCCTTCGCATGCATTCGGATCGTTTAGCACAAGTGCTCTTCAGTCTCTGGGCTTCCAGGATGATGGTGTCGCATCTGATGGCCTTGCAGTTGTTGATTTGGGGCAAAATCGAGATGATGGCACACAAGAAGTTGTTAATTCTGCACAAGAGGTAGCTGGGGAAGTGAGTGTCAGCCAGTCAACCGGAGACGAAATGCCTATGGATTTTGGGCCGTATGTGAACCCTAATGAAGTACAAGACACTAACAGCACCATGCCCCCGAAGACCAGCGTGGAAAACGCCACACCAGGAGACGCCAAAAAGAATGACCAAATCAAGACCCGAAAGATAAGCGCACAAAAACCAGGGAACAAGAACGGCACAGCGGTTCAACCAGCAGTGAAAAATCTTCTGAAAGACAAACAGTCTCTGGCTGCTGCCAAAAATAAACCACCTCATCTCACCAGGCCAGGGCTCTTGCAGAAAGCATCCAGCCATCCCAGAGACAAAAAGATAGATGCAGGCCGCCCAGAAAGTCTCAAAGGAAAGCCCGTGGGCTTGAAACGTCCAGGTGGGCCAGTCACTTCTAAATCGCcctcaaaaatacaaaagattCAAGATGAACCTCCTGCGAACCAGACCGTAAACCCACCTGTCCCGGTGTCCCCGACTGTCAGCAGAAAACCCTCATCTGATTCTGGTCCAGGTGTCAAGTCGGTCCAATCGCCTCAGCCTTCGAAAAAGCCGCAAAATCCTCCCACTCccactgtaaacaaaacaaacccacCTGTGACAAACAGCCAAGGAGAAGAGGAGCAGGAGAAGGCCAAGATCAAGAAGCCGGAGAAGATCCAGCAAAGACATAAGAGTAGAAACTCAAGGAGCGTCTCGATAGAGGAGCCGCAGCTGTTTATCCCTGATAATGCCCCCGTGGTGAAGAAGGATGCCGAGGGCGAGCCTCCTCCTGAAAGCGAGACTGTGTGGGATCCCAGCAAGCACTGTGGATTATGCAAGAAACCTCACAACAACCGGTTCATGGTGGGCTGCGGCCGCTGTGATGACTGGTTTCATGGGGATTGTGTGGGTCTGGATCTGGCTAAAGTTCAGCAGATGGAAAAGGAGGACCAGGAGTACGTGTGCTTGAAATGCTGTGCAGAAGAGGATGGGAAAACCGGTGTTCAAGCCGCAGAGCAGTCAGATGATAAGTTGTCTGCTAAGCAAAAACAGAGACCCCAGCAGTCGGTCACTGCAGGTGGAATACGACCCTTCAGAAAAgATGTTGGAGAACGACGACCGTCAGAAGATTCAGCATCAAAAGgACCAAGTGTGAAGCATGAGGcgaagaaaatgaaaatctcACCAGTGACCTCAAAGAAACCGTCCACTGGACAAATCAGGCGAAGCGTTCGGGACTCACTGGAGGAGATTCTTTTGAAACGACTGAAGGAGGCCGAAATGAAGATTTCATTGGACAAGCCTGCCGAGTTGGCcagaagaacagaaaaagagcTTTTTGCTCTCTTTCAGGGTGTTGacagcaaatacaaaaataaatacagaagtCTGACTTTCAATCTGAAAGattcaaaaaataatgTGTTATTCAAGCGGGTGCTCAAGGGGGAAGTTTCCCCTGCAGATTTGGTGCGTATGACTGCAGAAGAGCTGGCCTCGAAGGAACTGGCTGCttggagacaaagagagaatCGACATACAATTGAAATGATTGAGAAAGaacagagagaggcagagagacgTCCTATTACTAAAATCACCCATAAAGGGGAAATTGAAATTGAGAATCAGGAGCCTGCCAAGGCGCCAGAGGCCATAGAGGTTGAGCCAGAGCCAGTGCCGAAAGCTGCGGAAGTGCCTGAAGAAAAACCCCCTGAGACTAAAGCTGACAGTCCTAGAAAATCTGTAGATACCACTAACTTGCACAAGTCTCATCTGTTTGACCTCAACTGCAAAATATGCAcagGTCGCATGGCTCCCCCTACAGAGGAAGCCTCTACAAAAGTGGTAAAAGTGGCTACAACAGTTGTGAGGAGGCAGTCTAGTACGACAGATGAATCTCAGCACTCAACAACTACACCTACATCAGCACTGATGGACGATCTGTCTTTAAGAGCCATGGAGGAAGGCCTCCTCAGTTTTTTGCCTGAATCCAGgTCAGATACTTTAAGTAGCAAAGAAGACACAGCTACTTTCCTCGGCAGTTTGGAAAGTCTGTGGAGCGGATTTGTTGACATGCCGGCTGTGGCAAGGTTTCTAACAAAAGCTTATCCCGTCTCTGGAATACTAGACCACCTCACACAGGATTTGCCGGACAACATCCAAGTAGGTGGACGAATCTCCCCTCAAATAGTCTGGGATTATGTTGAGAAAATCCGTGCTTCCGGGACAAAGGAAATATGTGTTATTCGTTTCTCCCCTGACACCGAGGAAGATGAGATCTCGTATACTTTGCTGTACGCCTATTTCAGCAGCCGAAGAAGGTATGGTGTTGTTGCGAACAACCGCAAACAAGTTAAAGACATGTATCTCATTCCTCTCGGCTCCACAGAAAAAATTCCCCATCAGATTGTACCATTTGATGGTCCAGGACTGGAGACCAATCGTCCCAATCTTCTTCTCGGATTGGTCATCCGCCAGAGACCAAAAAGGGACTTTGGTGTAATACTGCCAAGCGATGTCAGCGAAGCTCCAAGTTTCTTGGCAGAAAGCAAACCTCATGTCGATTACCCACAGAAAACTCCTGTGGCTCAAGATGTGGAGAGAAGTTTTATCACTGCTCTGGCGAGCACACGGAAAAAAGACACTGCAGACTTAATTAAGTCCGCCGTTGACGAACCTATATTGGATACAGAGACCGAAGAGAATGTTTCTTTGCGCTTTCTTCCCGGGGTGCTGAAGTTGCCTGGAAATGCAGCATCATCTTCAAGCGACACTGTGAAGAGTGATTCTACAACAACCGTAGCCAAGACTCCAACCCCTGATAGTGGAAACCATGCAGAAATCCATCCTAAACCTACAGCCACCGCTCCTCGTCTTGATCGCTTCATTATCAAGAAAAAAGACCCCAAAGCTGTTAAAGCTGAGCAGGCGCCATCCAGCTCCAATTTGGAGACCAGCTCAGTAAAGAAAGAGAGTGGAGTCATCCTTTCTCTAAGTGACAAACCTGCAGATGTTTCAACAGAGAGTTTCCTTTCTTCTCTCACGGCCGCTAAACCCAAAGATGAGTCTGTGCTTGGCAGCACAGCTTTACCAGCTAGTCAAGAAACAAGTGAAACAACTTCATTGGATGCATTGAAAGATTCTGTCAATGATGACGCTAGCTCTGTCCCGAAAAACGAAACCGTATCAAGTCCCAATATGTCTTTGAAGACATCTCTTGGTATTTTAAAGACGCCGTCTTTATCGAGTGAATCCATCGAGCTGAAACCTCAACAACCAGAAAGTAATTTAGAAAAGAAAGTTACCCAGCAACCATCAGCGCAACCCCCTCAAGAGTGCAAAGCCATAGAGGACATTCAAGCCATCACCACAATCTCCTCCTTCGGGAAAAACGATGGTCCCAAACAAACCAGGACCTCTTCTTTTAACCCTAAAGTGTATAATCAAGCCACAATTTTTCACTCGTATCATGCTGGTCCACCTGATCCCCAATATTATCCTCCTCCAGCCAATCCTGTCCCTTTCTTACCCCTTCAGTCACAGGTTCCTCCGCCTTTCCCGTTTCCTCCTGGTCCACCTCCTCTTCCACAGATGTTCCCTCAAAGCGATCCTCACATGCTCACTCCACCTTGGCCTCAAACCGTCCCTCCCCAAACGCTCCCTGTCCCTCCTCTGACGTATGATTCCAGCTTGCCAACCTCTTCTCCCCTCAGCAAAGACGAGAAGGGCTCGGAGAAGTCCTACGACGACTTGGGCGACAAGCCGTCCAGAAGGTCTGATGAGACCTACAGGAAGGacaatagagagagagagcagtatGACAGACACCATCACAAAAGCAGGCACTACGACAGGGACCGAGAAAAGCACAGGGACAGAAGTCAGAGTCATAAAGAGCGCCACTCGAAAGAGGACAGGTACGACAGACCGAGAGAGCGGCACCACAGCGGCAGtcattacagagagagagacaaacacagacgaGATTCTGACTATGAGAAACACAGGAGAGACTCGAGAGACAGGCGTTCATGATCTTGGCATCAAACCGCTCCACTTTCCTTAAATCTGTCAAACAGTAgaagaaaactatttataaagttgcaaaataatttttatatggAAAAGCAGCTAGTATGAGacttttagttgttgttttttttgcaatcaaaaggatatttgttttgttttaatttacattttcccTTCCCATTACTCACTAACATTGTCTTCACAAGCAGCTGGTTgtaatcaaaaaaacaaaactactgTCGTACGCAAAGCTCATGGTTGATGAGAACGGCTTCTTTTGCTTcacgtttatttttgttttaatttttctaaatttgGCTTCTGAAGTATTTTCTATGTTTCAGGTGACAAATATTTCTTTGTACATTTTGGCTTGTCACACAACGGAAATGTGCATATTCAGCACAATGTGTTTATGTACAgttcataataaaatgtttttattgttagtaAAGCGACTGAATAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138846 lncRNA upstream 1515 14613092 ~ 14618650 (+) True G93833
TU138844 lncRNA upstream 1515 14616797 ~ 14618650 (+) False G93833
TU138824 lncRNA upstream 5122 14614225 ~ 14615043 (+) True G93820
TU138823 lncRNA upstream 8165 14607396 ~ 14612000 (+) True G93819
TU138821 lncRNA upstream 11596 14607396 ~ 14608569 (+) False G93819
TU139077 lncRNA downstream 47550 14678399 ~ 14678599 (+) True G93966
TU139091 lncRNA downstream 381701 15012550 ~ 15012780 (+) True G93978
TU139226 lncRNA downstream 686763 15317612 ~ 15317817 (+) False LOC122356934
TU139230 lncRNA downstream 693198 15324047 ~ 15329518 (+) True G94091
TU139242 lncRNA downstream 799449 15430298 ~ 15434168 (+) True G94101
XM_043256342.1 mRNA upstream 132665 14485066 ~ 14487500 (+) True gphb5
XM_043255317.1 mRNA upstream 226978 14377594 ~ 14393187 (+) True esr2b
XM_043255318.1 mRNA upstream 226978 14377594 ~ 14393187 (+) False esr2b
XM_043255316.1 mRNA upstream 226978 14377594 ~ 14393187 (+) False esr2b
XM_043255621.1 mRNA upstream 250608 14354679 ~ 14369557 (+) False frmd6
XM_043256277.1 mRNA downstream 208933 14839782 ~ 14842432 (+) True zgc:171579
XM_043255731.1 mRNA downstream 243066 14873915 ~ 15011010 (+) False adgrb3
XM_043255732.1 mRNA downstream 243073 14873922 ~ 15011010 (+) False adgrb3
XM_043255730.1 mRNA downstream 243074 14873923 ~ 15011010 (+) True adgrb3
XM_043255733.1 mRNA downstream 243074 14873923 ~ 15011010 (+) False adgrb3
XR_006252357.1 other upstream 253030 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 710562 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1403408 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 2031312 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 2044953 12571631 ~ 12575212 (+) True G93296
XR_006252421.1 other downstream 475609 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 624225 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 665000 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1233990 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 1233990 15864839 ~ 15869803 (+) False hps1

Expression Profile