RNA id: XM_043256049.1


Basic Information

Item Value
RNA id XM_043256049.1
length 4499
RNA type mRNA
GC content 0.51
exon number 24
gene id tarbp1
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15295849 ~ 15314656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCAGGAAGTAGACGCGCACACGTGTGTGTAACAGGCGAAAACATCAGTTCAgattttagctattttaaagCTGTGGATGTTTTAACGTTAAAAGGGCTAGTGAGAAAATGTCTAATTTTTTGATAAACACCCTTTTGTCCCGCTATCCCGATCCCGAGGACTTGTTCAGTACTTTGTGCTGGCCAAGCACAGCACGCCCAGACGCAGAGAAGATTGAAGCTCTAACTGTTTTGATCCGAGAGCTTTCCAACAAATCGCGAGAGGAGCGCTTTAATTGTAAAGTGCAGTCGGTGATATGGAATCAGTGCATGCCACTATTGCAAACTATCTCCAGCGCAGATGATGGAGGTAAAGACCTGCTCAGCGCTGTCTGTGGACTTTTTGCAGCGTGCGTCAGTACGTGTCAGACCCCTGATGTACCTGAGAAGGTAAGTCGCGTTCTTCTGCCTGTGCTGACGGCGAAAGATGATGGCAACCATGAAGCCAGCAGGTTTGACATGGATGTTGCCATTGAAGTCACTGCAGTGCTGTTATCCAGCATCTCTTACGACAGAGACATCATCTCCAGGACCTTGTTTTGCACTCTTTGCTGTGCTAAAGATCTCTCTGACTCCATCATCTCAAAAATCATAGTCCGGATCTGGTTCACCATACTCAAGTCCTGCGATAAAGACACTGAATCGGAGGTCCTACATCAGATATGGGATGATCTGCTGTCATGGCATCAGAGAGATCAGACAGAATCCGTATCAGCTCGGGTTCTGTTGTGTCTCACTGCTCTCTCTGACCACCTCTACTCATCGGAAACATCTCAGACCCGGCCGGACCCTAGAAGATCTCAAAGGTTTCTTAGGGCAATTCAGGCTGGATTGACCCATAAGGACAGCGTGACCCGCAAACGGGCTCTTTATCTGCTCACCAGGTGTGTTGCCCTGGCGGAAATCAAGAAAGAAGATGTGTTCACCAGCGAGGAACCCGACACAGATGAAATCCTGTTCCGATGGactccagaaaaaaaacagttactgAGAGAATTCTGGGAAGATTATGCGCTAGTTTTAGAGACTCTAGAGGAAAACCagATTCACGTGATTCGACCTGTACTTAACAGGATCGACGTGCTTGTTGAGACCACAGCGACCGACATCCAAGGTGGGCTGTTTTCTCCGTCCTGGCTGCTGTGTGTGTATCAGCGCATGTTTCACAGTGAGAACAAGGCGGTTATGAAGGAAGGAGTCAATCACCTGTTAGAACTCGAAGCGCTGCATCGTCCTGCGTTTGCTTTGGCGTTCTCACAGTTTGTAGTCGGTCCTCTCATGGATGTTCTTGCAGAGAGCTCTCTCTATCACAGAGCACCACAGCAGAACATCAGAGAGTGTCCAGAGCTTGGAGTAAAACTCCAAATGTTTATGGTGAAATTCTTCAACAGTTTGCCAGAAGGGAACAGAGGTTCAGTGTTGCTGCAGCTCGTTCAGCGGTTGGGTTCACGTCCATGGTGCGCAGTCCCACTGCTCTTTCTGTCCCAGGCCCTGTCCTGTCTGACCCCCTGTCCTTTACTAGGATCCGATGGACTTCTTGCATTCAGAGAAGTTCTGCGCTGCACTATGATCACTCACCAGGTTCTTCTGAGAGGAGCTTCACAGTGTTTTCTGCTCCATGCTGCTCTCTGCCTGGCAGATGTGTCAGCAGTGTCTCTGGATGACATATTTGGTTTTCTCGTACATTTTCGAGCTGACGAGTCTTTATGCCGGGGCACAGCACTTTGGAAAGAGCTGTGTAATTGGCTCCAGGCTAACGAAGGCTGTTTTCGTTTGACCGACGGCGATTCGGGATCCAGCGAGGAGTTTCACACTGAAACCTCAAACGGAGATGAAGCTCCCGTGTTCAGCTACGTCCAGAAGCGTCTGAGGACCTTCCTCACAGTTCCAGCCACCTCAGatCAGACTGGAAGTCTACCTGATCCAGGTGAGGCCGAGCTGCTGGCACGAGCTGTACTGCTTACAGCCGACCTTCAGAGGAACAGGAGCGAGGAATTGGGCCTAGAACTGCTTCTCCAGCCCCTTCTGGACGTCTTAAGGAGACTCAGCACGAATGTCTATCTGGCGCTGCGCAAGACAGACAGGAGCCTGCAGTTACTGCTGCGTCTGCTGCAGCTGCATCGCAGACGCTCGGATACAGAGAAGGAGAaggAGGATGTAGTGGCCGTCACGTTGAAGACTCTCATGCTGTCGGTGGTGGAATCGGTGCAGGAGTTTCTGCTGAGGAGGTTGAGCGGGGAACTGAGGGAGttaTGTGATGTGGAGAGGTCTGATCTTTATCTCTCAGTACTGAGGGAGCTGGTTCTCACTTATTCCACTGTGTCGTGGTACGGATCTAACTTGCAGAAAAACTACATCCCAAAACTCATCACAAACTGCCTGAGGATCTTCAGTGAGCCCTCTGAAGAGgatgCATCTGTGTCGGGGCAGGTTCGGAGAGCGGTCAGTATGGCTACGCTTGCGCTGTTGTGTGACATGGCTAACCGAGGTATCCTGAACTCCCCATCTGAGGCCCTGGGATCACTTCACTCGATCGCTGACTACTTCTACCCTTCATCGCCTTCGTCATCTCAGCATCTCAACCGTACCTTACTGAAGCCCACAACTGTTACAGTCAGtgattcagtggATGGTCTCATGCTGAAGAACTGGGGACGAATTGTGGCCCAGTTTATTCGAGATCAGTGGACGTGTCTGTGTTTCCTGGAGAAGTCTGCTGGAACGCTCCGTGCTCCTGAGGTCCTGAGGGCTGCTGTAGATGCTCTGGCGTTGCTGCCTGGTCATCTTGTTCTGCCCGTGCTGGACTTCATGTCGTCAGTCTTACCACAGGTGGTGCAGTGTGATGAATCTCTCTGCATTGAGGCCATATGTGCATCATGGAAGGTGGTTCAGGCTCTGAGCACAAACCCTCATGACTTCTGGTCCACGCTGCAGGGATTTGTGCGCTTAGCTTTTCACCAGAGGCTTCTGCAGCTCACGGAGGAACAGAACCCCAGAATCACAGCCTGCATACAACAGATTGTTAGTAAGATTATGGAGTTGGCTCAGATCCGATCAGGAGTGTTTAATGTTCTGATCCAGCATTGCTGTGAGACTTGGCTTCCCTCTGGGACAGCAGAGGGTGTCCAGTCAGACGCTGTGTTCAGTGCGGCTCTCTTTTACCTCGACATCCTGACCGAGGCTTGTGTGTACGGCCCAGTGTTCAGAAGAGACCAAAGGCTTGTTCAGGAGGTTCAAAGCTATGTTGAGCAGCTTGGTGATAGTTGCGCAGCAAACACAGCTGTCAACAGtGATAACAGGGATGATCAGTTTCCTCGAGTGTGTGCTCTGGCTTTCCTCTGCCGCTTGAATCCATCCAATCAGCTTCACCAACGTCTGATGGAAGAGCTCGTGCGACGACTGCTGAAGAAGGATGCCGAGATTTCCAAATCCAAAGTGCGTTACTATAGCAACTCCATCCAGCACAGAGTGAAGAACCGCGTGTGGCAgacgctgctgctgctcctgcaTAAACTCAGACCGGAGTTTGTGTCAGAGAGTGTTTTGAGTCACGTGTGTGAGGCTGGGTTCTGCAGCAACCAAGCATCTGTCAAGTATCTGATCGAGTGGACCCTGATCCtggtcctccaccagaaccccTCTCACATCCAGAACCTGTGGAACTGCTTCAGTGTGGATCATGAGAAGACAAAAACGAGCATTTGCACCTTCCTCTCTGTCCTCGTGCACCTGAACGTCCTTCTCCCAGTACTGCAAGATAAGGAGGTTCAGTGGAAAAGAGCGGTGGAGGTGAGCCTGCAGTGGTGTTTCAGTCATAATTTCAGCATCCGTCTGTACGCCCTGCTCGCCCTTAAGAGGGTTTGGGAGCTGGAGGACGCCCGTGTTCTCTCAGAGGAAAACCAGGGTGGACTGACAACAGTGGTCCATGCCTGTTTACAGCAAGCTGAAGCCCTGCAGAATACCGGCTGTTGGCTGATCGCCCGGGACCCCTCCTTCCTGCTCTCCGTCTTTCTCGCTTCAGTCTGTTTCCTGATTTTGCTAGTGTTCAGGACATTCCCAGGCCCAATGACCATCTTTCTCATGAATGTGATCATCAGCTCCACAGACCCAGCAGAAGTTCCTTCAGCccatcctcttcctcttccctccCACATCTGCTGAGGTCGGGGCACAGGCCTTGATACGGCTTGCCTTAAGGTCCGCACTAATTCTCTGTCCGTCTTGACTTAAGTACTTTTCTTCTTTGCTGCTTCTTGTTCTTCTAAATGTTCTAAAATAGCGGATAATCGTCCATTCTTCCATTTAAAATGCGTCTTGATTTCGCTGCTTGCACAATTTCTGGTCTCAGTCCCTTCAGGAACCACATCTGCAAATGACTCCCCCAGATGCCGGGTTGATTTCCTCTGTCGTTGGGCTCTGTTAAGATGCCGTGTTTGCTGAATATCTTGTGAAATCGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139091 lncRNA upstream 283069 15012550 ~ 15012780 (+) True G93978
TU139077 lncRNA upstream 617250 14678399 ~ 14678599 (+) True G93966
TU138846 lncRNA upstream 677199 14613092 ~ 14618650 (+) True G93833
TU139226 lncRNA downstream 9756 15317612 ~ 15317817 (+) False LOC122356934
TU139230 lncRNA downstream 16191 15324047 ~ 15329518 (+) True G94091
TU139242 lncRNA downstream 122442 15430298 ~ 15434168 (+) True G94101
TU139246 lncRNA downstream 126606 15434462 ~ 15453608 (+) True G94104
TU139252 lncRNA downstream 153517 15461373 ~ 15461752 (+) True G94110
XM_043256261.1 mRNA upstream 655 15278360 ~ 15295194 (+) False zgc:172136
XM_043256260.1 mRNA upstream 655 15279442 ~ 15295194 (+) True zgc:172136
XM_043256262.1 mRNA upstream 655 15282045 ~ 15295194 (+) False zgc:172136
XM_043255710.1 mRNA upstream 20615 15255074 ~ 15275234 (+) True fam135a
XM_043256050.1 mRNA downstream 6958 15314814 ~ 15318177 (+) True LOC122356934
XM_043256128.1 mRNA downstream 274012 15581868 ~ 15607881 (+) True golga7bb
XM_043254818.1 mRNA downstream 406337 15714193 ~ 15723743 (+) True slc25a28
XM_043255334.1 mRNA downstream 457098 15764954 ~ 15773545 (+) False got1
XM_043255333.1 mRNA downstream 458419 15766275 ~ 15773545 (+) True got1
XR_006252370.1 other upstream 20615 15255074 ~ 15275234 (+) False fam135a
XR_006252421.1 other upstream 69666 15106458 ~ 15226183 (+) True LOC122357077
XR_006252357.1 other upstream 928714 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 1386246 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 2079092 13216658 ~ 13216757 (+) True LOC122357146
XR_006252368.1 other downstream 556983 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 556983 15864839 ~ 15869803 (+) False hps1
TU139358 other downstream 565588 15873444 ~ 15877422 (+) True G94186
TU139356 other downstream 566415 15874271 ~ 15876678 (+) False G94186
TU139427 other downstream 596090 15903946 ~ 15904349 (+) False nkx1.2la

Expression Profile