RNA id: XM_043256061.1


Basic Information

Item Value
RNA id XM_043256061.1
length 4801
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC122356942
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 21269350 ~ 21323003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCTCCGGCTCGGAGCGCGCGCGCGGGCGCGCGGGGGGGTAATTCAGTCGCTCTCGCGCGCTGCCGCAAGGACGCTGGCTCCGCGCGCTCGCCTCGAAACCGGAGTAAAACGCAGCTTTTATCCACTTTTGTCGGATGTTGAGCGAAGGTCAATGTCTCCGTGGACTCGGTCGGACAGCTCGCCCTGATATTTCTGAGAAATGCCCGTTTCTACGCGGCGCCACAGACTCCAGCGGACCGAAGCTCTCCTCATCTCACCATGACCTTCTTCAGCTCTTTATTTGCCCTCCTCTTCATCAGCAGGTTTCTGGAGAACTCTCTGCTCAGCGCCGAGGTGAAAGAGGGAGAGATTCTTCCTCCGACCATCCAGAAGCTGATGAAAGGATACAACAAATACCTGCGGCCTTTCTTTGACAATGGTCCCGTCACGGTGGGCATGAGTTTAGACATCGCCAGCATCGATACCATATCAGAGATCAACATGGACTACACCGCCACCATCTTCCTCCGGCAGCGCTGGACGGACGAGCGGCTGGTGTTTGAAGGGAATAAGAGTTTAAGTCTGGACGGCCGTCTGGTGGAGCTGCTGTGGGTCCCGGACACCTTCATAGTGGACTCCAAGAAGTCCTTCCTCCACGACATCACAGTGGAGAACCGACTGATCCGGATCTTTCCCAACGGAACCGTTCTCTACGCGCTCCGGATCACCACGACTGTGGCCTGTAACATGGACCTGACCAAATATCCCATGGACAAACAGACGTGCACCCTGCAGCTGGAGAGCTgggGTTATAACGTCAATGACGTGATGTTTTACTGGGCGCGTGGGAACGACTCTGTGAGCGGTCTGGACACGCTGAGACTGGCTCAGTACACCATCGAGGATCATTACACCTCCGAATCTGAGGCCGTATACGAGACGGGAAATTATCCCAAGCTGATCTTTCATTTCGAGCTGAAGAGGAGCATCTTGTACTTCATCCTGGAGACGTACGTGCCGTCCAGTCTGCTGGTGGTTCTGTCCTGGGTCTCTTTCTGGATCAGCCAGTCATCCGTCCCCGCTCGCATCTGCATAGGTGTGACGACAGTCCTGACGATGACCACACTGATGATGGGTGCCCGGACGTCCCTGCCCAATGCCAACTGCTTCATCAAGGCCATCGACGTGTACCTGGGCATCTGCTTCAGCTTCATCTTTGGAGCGCTGATAGAGTACGCCGTAGCCCATTTCTGCACACTGCACCACCCCGACTGCAACAACGCACTCATGTACGGTCATCACATGCATGAGTGTGAGGAGGAGATGAACGGCATCGTCACCACCATCGCCAGCAATTCTTCACGGCTAAAGCGGCGCAAAGACTCTCCGGCTCCGGCACCCACGCCCGCCGCCGGCGGAGAGCCTGGCCTCGCGCCCTCCAGCCCGACCACCAGCGAACCCAAGACTGCAGAGGCCCCAGCGGAGCTCCTTAGCCGCTGTGCCAAAAACATCTCCATCCTGAGGAAGATCCTGAAATCCATTAACTGCTGTCATGTGGAAAACCCACATTATATAGACAACTACTCACGGTTAACCTTCCCGCTGTCGTTCATCCTCGTTAATCTGCTCTACTGGACCTACTACCTGTACTTTTAAGTAACATATCATGCTGAATCCTTTCTGTGTGTTAGTAagtaagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaaagacCAGTAGAGAGTTACGGTTGCCCCAATATTAAATTTCTCAGCCAATACCAGTACCCGGTTATGGAGAATGATGTTGGCCAATAACGATGGCTGATTATTCCGAATGATATCTGTCGATACAAGTAATGATTATTCAATATACCAAATGCCGAAAACGGCTGCTAATTATTTCAGAATGATATATGCCGATACCGATATCAGATTTTTCAGAATATCTGCCGATACCAGCAGTGGTTTTTCTGAACAAACAATGCTAATATCAATCACCAATTATTCAGAATTATATGTGCTAATacaattattcataatatttgtcAATACCGATAACTGATTATTCAAAGTGGTATCTTCCAATATTGCTAATCGATTATTCAGAGTTACATCAGCCAATAGAATTATTCTGAATGATATCTTCCGATAGCAGATTATTCACAATGATATCTAGCTATCCGATTATTCAGAATATTATCTGCTGACACAGATACCGGTACTGCTAACCGATTATTCAGAATGATGTCTGCTGATACCGagaaaaatcagatttttcagAATATCTGCCGATACCAGCAGTGGTTTTTCTGAACAAACAATGCTAATATCAATCACCAATTATTCAGAATTATATGTGCTAATacaattattcataatatttgtcAATACCGATAACTGATTATTCAAAGTGGTATCTTCCAATATTGCTAATCGATTATTCAGAGTTACATCAGCCAATAGAATTATTCTGAATGATATCTTCCGATAGCGATAGCAGATTATTCACAATGATATCCACCTATCCGATTATTCAGAATATTATCTGCCGACACAGATATCGGTACTGCTAACCGATTATTCAGAATGATATCTGCCGATACTATAGATTACTGGAAATCTGAGTTTGGTTTCACTTATGGCTAAGGAGGACGAACAGACTAAATCTTCTAGATTAATAGCCAACAGCCAAGTTAATATAAACCAGTAGTCAAGTAGTCATTGTTTTAGACTGTTGTTGTGAGTAATGCAGCCTTTTTGAAATATTGGCCATGATGAAGTTGTTAAATGCTGGTAAATGGTAATGTAATTGACGTTACAGCAATAATAGCAAATAATGACGGATTACTGGGACTTTGCTGACATCCCCCAAATCACTGTAGGTTTTatcacaagaggaaaaaaatgggataattttagtatttgaaagtgtgtgaatgtgattGTTAGAAACGGTCATCTTAatctgcatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgttcatCATCATTGGCTGGACGTCACTGAAACAGTacaatgcagtaaaatattCTCAAAAAGTCCTAACAAGTCGACATCCTAAAGGCGTAGTTCGTTCAAAAGGGGAAACCATGTTGTTTACTCGCCCTCACGTCCACTAAAAAACCTCTATGACTGTTTGAATCTCACTTCCGTTTGCAGTCAATTCAAATATGACAGCAGTTCTTTACACAACCCGCCTCATCCTTGAGGTTAGATAATATTATCGACAACATTGAGTAAAGTGTGCTAATGTTTTACAAagctacaaacaaaaaaattgctatTACTTTGCTATTAGAGCCGATATAATAGCGTTGAAGTTCTTTTACGTTTTTCGGGTACAATGAAATTTGAGGTTACACttgatttttatattctttttatagTCCTAGAcgttctactaactataagcgactttgtaactacatgtcaactaattttcattaatttgcaattacACGTCTGCTAACTTAGGTTTAAGTTGACATGTACCCAAAAAGTTTGGACCCGGCAAAATAAAGCGTTACGGTATTAGGCAGACcgtctactaatactctgcTAGTTGACGTCTAGTTGGAAAATGGCTTGCTGTTAGTagaatttctaaataaaaagcgGTAGTTTACTGTTATCTTAGGTGAATGTGTAAATACGGTGTAATGCTGCACGTTTCCTTTCAATAATAAAGACGGCAACGGCAAAAATGGAGAAAACAGAAGTTCATCCTGTAGTGCACGTCTactgtttatttagtttgtcaTTCTAATAATCCTTCGGTAAATCGAATATCAAAATAACCGTCTACTGTAGCCCTAGTTGACCTTTAATCCGGTGCAATTAGTCATATTTGAATTATGCACAGGAGCGAATGAGATTCGAGAGCTGCTGGACACCTGAGGGTCAGTAAATAGtgatttttaggtgaactatccctttaagctcAGTCTCTTTTAGTCCATCACGGTGCGTTTTCGTTCgctgtgtctgtgttttccaCACCGTAATGCCTCGAATGCGTCTTCCTCGCGTATCTGTGCTTCTCGAGTTCGAGTTGCAGGGCAGACAGAAGCCATCTCTCCCCGTTTACTGCTTCCATAAATCCTCTGGCCTTGGCCGCTTCTCTTGCACACCACAGGATCGATGGCCGTGTAAACTCTTCATGCGGCGTGGCTTTGAAGATTCAGAGGTGTTTGCGGACTCCGGACCGATCCACTGAACTTCTTGGAGACGTGCATCTGCGCTCCGAAGCTCTCGTCGCGAACCGGACCGAACGCTTTGGGTTAGGATTTTAACTGATGTGTTTTCTGAAGCTTTGTTTAAGACAGGCATCACTTTTCTAAGATGCGAGCGctcattgtttatttgaatggaTGGGTTTTTCTTTCTGGATCACGTAacggttttttttcccctttgggATTGTTGATGCTCTTAAATGGATCGGctatttttgtaacttttaattGGCTTAATTGAGATGTTTTGAGCGTTTGCCGTCGGCATGCAGTCGGATCCTTAATTTCACGTCGAATGCCTTCCGTTGAAAAGTTGAAACTACGAAGTGCTTGattttcaatttaatgcatgtttagggtaatatttattcagtgtaataatacattaatatggacatgtaaattaatattcacTGGACTACTTTGTGTTGTTTATAATTTGCTACGTTTAGATTTAATGCAATAACTTTGTCATTTACTATATATGCATATCAGGCTTATTGtctttaactaaaactaaaaccattaaaaaaaagtacttaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141427 lncRNA downstream 265699 21002627 ~ 21003651 (-) True G95643
TU141426 lncRNA downstream 267506 21001337 ~ 21001844 (-) True G95642
TU141425 lncRNA downstream 270085 20999040 ~ 20999265 (-) True G95641
TU141424 lncRNA downstream 272839 20996083 ~ 20996511 (-) True G95640
TU141417 lncRNA downstream 292853 20976279 ~ 20976497 (-) True G95635
TU141539 lncRNA upstream 164511 21487514 ~ 21495153 (-) True G95715
TU141779 lncRNA upstream 551510 21874513 ~ 21874929 (-) True G95899
TU141784 lncRNA upstream 716779 22039782 ~ 22040106 (-) True G95903
TU141782 lncRNA upstream 791693 22114696 ~ 22120442 (-) True G95902
TU141813 lncRNA upstream 812933 22135936 ~ 22136391 (-) True G95922
XM_043255250.1 mRNA downstream 14712 21209818 ~ 21254638 (-) True LOC122356506
XM_043255253.1 mRNA downstream 227196 21027765 ~ 21042154 (-) False LOC122356507
XM_043255251.1 mRNA downstream 227227 21036985 ~ 21042123 (-) True LOC122356507
XM_043254782.1 mRNA downstream 271637 20955467 ~ 20997713 (-) True LOC122356249
XM_043256148.1 mRNA downstream 319652 20947987 ~ 20949698 (-) True vox
XM_043254705.1 mRNA upstream 524427 21847430 ~ 21866898 (-) True valopa
XM_043254889.1 mRNA upstream 585355 21908358 ~ 22024610 (-) True LOC122356328
XM_043255712.1 mRNA upstream 718452 22041455 ~ 22051686 (-) True pwwp2b
XM_043256219.1 mRNA upstream 829032 22152035 ~ 22156844 (-) False tmem254
XM_043254898.1 mRNA upstream 834662 22157665 ~ 22183174 (-) False srfb
TU141433 other downstream 89133 21007472 ~ 21180217 (-) True G95646
TU141260 other downstream 697788 20570038 ~ 20571562 (-) True G95526
TU141237 other downstream 772486 20493642 ~ 20496864 (-) True G95511
TU141235 other downstream 777274 20488785 ~ 20492076 (-) True G95510
TU141252 other downstream 782646 20481443 ~ 20486704 (-) False G95520
unassigned_transcript_1931 other upstream 90797 21413800 ~ 21413871 (-) True trnag-gcc_70
unassigned_transcript_1932 other upstream 251248 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1933 other upstream 330609 21653612 ~ 21653681 (-) True trnag-gcc_72
TU141816 other upstream 815326 22138329 ~ 22143970 (-) False LOC122357128
TU141794 other upstream 828739 22151742 ~ 22156824 (-) False tmem254

Expression Profile