RNA id: XM_043256075.1


Basic Information

Item Value
RNA id XM_043256075.1
length 2636
RNA type mRNA
GC content 0.53
exon number 3
gene id map10
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19685919 ~ 19688933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGTCGTTGCTAGGCGATGCGACGCCCGCGTCCGAGTTCAATTCCATCTCCGCCGCGTTTAACGTATGAACAGTCTCTCCTTTTAGAGACGGACATTTACACGTGAACGCGTCTTGTTTCACTCTCACGCCAAAGAACATGTCACCATCGGAAGAAACTCTCTTCTCACTGGAACTGGTCATCGATTACGTTCGCTTTGACGGTTCACGCGGCGACGTTTTGGATCCCGCAGTGGCCGTTCGCTTCTTAGATTTCCCCACACTGCTCATACACCGATCAAAACAAGAGGATCTTCCGTCTGAATCGGGATACGCGAACCTGTGCCTATCGCCTGAGGCTAAATCCCAAGCGGACGACGGAGAGCGTCTCAAGTACTCGTTCCATAAAGGCAAATCGTGTCTCTTTAAAATCAGTTTGCACTCGCTACACGCTCACCTCACGAACACCCCTCTCTACGCAATGGTGCTGGACGTCAAAGACGAGATTCCCAAACTTATAGGAAGCTCGTTGATTTCGCTGGCTAAAGCGACGGAGGAGATCAAATCGGATGTTGAAAAGCGCGGTATTGGCAACCCGTCCGCTCGCGGGGAGAGGCTGGCCGCCGCTTTGTGCGATCTGATGGGCAGGAGCATGGGGGTTATTTCTCTGGCGTATAAAATTGTGAGCCTGGGAGCTAATTTACTTCCTCACATCCCAGAAAGCAGGGTCCGTGAAGTCGGCGTGACCCGAGGAAAGGCAGAACTAGACTCCACGGTGCGTCCCGAGAAGGATGACCGTCCTGGGAGTGTTCTTTTAGGACAGATAAGCCTGGATGGACAGTCCGCCGGTGTGGTGATATCAGAAGCCAAGCGGCCAGGGGTTCCAGCTTTCACTCAAACCGAAACAACGGGGGCAAAGCAGAGAGTCTCGTGGTCTGAAGATGCGGAGGAAAACACCACATTCTGTCCTCCACCTCTGGTTTACTGCTCCAGCGCCAAGAACCCGCAGGAGAGCTTTACTGGGTTACTTGCGGCAATGGAGAACCTTAATATCGAAGATCCTGAAGATGGAAGTAATGAAGTAGAGCCATCCGACGCGCATTTTGCAGAAATGACGGCCATGAAGGCAGACGGATCGATGACGTTAACTTCAGCTCCGCACAAAGAGACGGGCTCGGCTGCATTCGGGCACGTTATCAGACAGTTACCGCTCCTGAACGCTTTGCTCGTCGAGCTCTCGCAGCTGAACGTCCAGGCGGCCCAGGAGCCCCTGACGGTTCATCCCAACCTCGCGTGGCTGTACGCGTCGGCGCAGGAGCCGCCGGGGGCCGAACGGAGGACGAGACCCGATCGGCGCGAGAAGAAAGCGTCAAACAAAGACAAGTCGCGACCCAAGAAGACGCTTAAATGCGGCTTGACGAACACTTTCCGTCTCAGGCTCAAACTGGCCAAACCGGGGACCAAACGGCACGAATGCATCGGACGCCAGGACGCAAAACAGAACCGGCCGCCATCGTCCGACCACAAACGCCTTCGCCGGGCAGCTGGCCGAGGTGTTCATTTAGAGGAAACCGTAGACACTAGCCGTTTTGATGTGCACCGACCCCAGACTCATCGAAAGCGCCAACGAGACCAAGTATCGGAACGCACATCGCAAACCCGCCGACCGAAGTTTGCATTCCAAGTCCTGATTCGGACCGGCATTCGCCCGTTCACGATTCGGACTCTATCCTCCAGAGAGGAGACGGCGCGCGGGCCAAGCTCGAGTAGCGGAGAGTATCAGGACGACTTCACGAGCCTGAACACCACCGAGGGATGCTCTCCCGACCCGTTTAGCAGCCCAGAGCCGAGCGGACGCAGAAGAAGCTCTCCGTCTTCCTCGCACTCGAGCAGAGGTCTACCCAAAGCGGAGACCTCTCCGCGCGTCATCCGACCGCATCTTCAGACCTCCGCCCTGAGCCTGTCTTCCGACGAGTCTGGGCGTCGCAGGCCTGGATCGCAGCGCGCCGGACAAAAGAGCCCATCTGCGCGCGGGACGTTTGGAAAATCGGAGGGCTTCGACGGTGACCCGGTCGATAAGGCCGCGCCGTTCAGCCGGGTGTCGGAGGACTCCGATTCAGCCGCTAGTAACCCATTGAAGCCCGTTTCATCTTCAGAGCAGACGGATGAGCAACAGGATGAACTGGGCTCTCTGGGAAGGGACGAGAATTGCCGTCACATTTCAGAGCTGGTGATCAACAAGCTTCCGGGATACACGCTGTGATTGGCCAGCGTTAATTTAACCGCGAAAACCACCAGAAACCAGCAAACGCGGGATCGATTAGTCGATGTGAATATGCTAAATGCTAAACTGTTGCACAGGACTGCATTCATTAGCGAGGAGTTATTTGTGCATCCATTCCGTCTGAACGAAGCATTTGAGACCTTAttagttcatctaaaaaattaaaaatatttgttgctGCAGTAAACAAACAGTTGTTTCCAAACCAGAGCCTTAAATGCGttgataaatgattaataaaccGGTGTTAAGTTATTTAGTAGGGATGAAATGGGAATGTGGACGATACtgaattcatatttattgtgaatgagatattttgtgcttttctgtGAAAAACATCCTGTATATACACTTAAATCTTTAAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140737 lncRNA downstream 15588 19669709 ~ 19670331 (-) True G95147
TU140683 lncRNA downstream 92543 19591872 ~ 19593376 (-) True G95110
TU140625 lncRNA downstream 257993 19425563 ~ 19427926 (-) True G95068
TU140608 lncRNA downstream 398495 19286037 ~ 19287424 (-) False itga9
TU140529 lncRNA downstream 477650 19201843 ~ 19208269 (-) True G94997
XR_006252305.1 lncRNA upstream 129120 19818053 ~ 19835653 (-) True LOC122356282
TU140781 lncRNA upstream 157368 19846301 ~ 19846534 (-) True G95190
TU141149 lncRNA upstream 232069 19921002 ~ 19921640 (-) False LOC122357123
TU141188 lncRNA upstream 386438 20075371 ~ 20075937 (-) True G95469
XR_006252294.1 lncRNA upstream 419258 20108191 ~ 20140958 (-) True LOC122356209
XM_043256074.1 mRNA downstream 586 19680245 ~ 19685333 (-) True ntpcr
XM_043254966.1 mRNA downstream 153916 19505862 ~ 19532003 (-) False fbxo11a
XM_043254965.1 mRNA downstream 153916 19505862 ~ 19532003 (-) True fbxo11a
XM_043254703.1 mRNA downstream 225522 19429836 ~ 19460397 (-) False kcnk12
XM_043254702.1 mRNA downstream 225522 19429836 ~ 19460397 (-) True kcnk12
XM_043255586.1 mRNA upstream 173597 19862530 ~ 19907061 (-) True disc1
XM_043255587.1 mRNA upstream 173597 19862530 ~ 19903482 (-) False disc1
XM_043256389.1 mRNA upstream 220262 19909195 ~ 19921669 (-) True LOC122357123
XM_043255840.1 mRNA upstream 307716 19996649 ~ 20025261 (-) True LOC122356781
XM_043255837.1 mRNA upstream 336736 20025669 ~ 20036473 (-) True LOC122356780
TU140311 other downstream 1013026 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1013026 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1013026 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 1966213 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 1966740 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 179080 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 454663 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 790992 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 792510 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 799852 20488785 ~ 20492076 (-) True G95510

Expression Profile