RNA id: XM_043256113.1


Basic Information

Item Value
RNA id XM_043256113.1
length 2044
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC122356972
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4829737 ~ 4836732 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCTGCAGAACCGGTTCGGTCTAGCACGGGTTGCGCGGGCGCTAAACGCCATCGAAACAGGCCGTTATATCAGAACCGAGCAGCTGCACGGCCATCCTAACTCGCAATGAAGAGGTCCGATTTTTAAGCGGAGCGCGTgaggttaattttttttttcaaaagcgcGCATCCGACCGAGTTCATTAGGAGAGGTGAAAATGAACGAAGATCGGCACGCCATCGCGTAGAGACCAGGTGAAGAGAGATTTTTACAgaacagCAGAGGCTCGGCGCACAAGGACAGTGAATAGGAATAAGACCAGGAACTCCTCCTTATTCGCGCCTGTCAGAGGACAGATATATTTCGTACATGACGCATTTGTAGAGAACAAACAGGTACTCCATCCAGTGGCACTGTGAGTCAAGAGGAGaaAAGGCAGGATGTCAGCCAGAGGAGGAAAGAAGAAGATCACCAAGCTGTCTCGTTCTGCCCGGGCAGGGGTCATTTTTCCCGTCGGGAGGATGATGCGTTACTTGCGCACAGGAACCCATAAGTATCGCATCGGCATGGGCGCCCCCGTCTACATGGCAGCCGTCATCGAGTACTTAGCAGCTGAGATCTTGGAGTTGGCTGGAAACGCAGCGAGAGACAACAAGAAGGGGAGAATCACTCCGAGACACATCAAGCTGGCCGTGGCCAACGATGAGGAGCTCAACCAGTTGCTCAGAGGGGTGACCATATCAAATGGCGGCGTTCTGCCTCGCATCCACCCTGAGCTTCTCTCCAAGAAGAGAGGAGGCAGGGTGAAAGTGGAGACTCAGGTGACCGTTCCAGAGAAGAGGGAGAACCGGAAACCCATCAAGAAACCCAGCAAAAAGAGCAAAGGAAAACCAGGACGCAAACCCAAAAAAAGCACAGAGAATGACAAAGAAGCAGATGCCAACACAACAGTGGAAGACGGACCAGGAGAGGGATTTACTATCCTCTCTGCGAAAAGCTTGTTCCTTGGACAAAAGCTGTCCCTTACAGAGAGCGAAATCAGCAAAATCGGCACGATCAAAGTGGAGGGAATCATCAACCCCACGAACGCAGAGATTGACCTGAAAGAGGGAATCGGTAACGCTCTGGAGAAAGCTGGGGGAAAAGATTTTCTAGAGACCGTCAAGGAGCTGAGAAAAAGCCAGGGTCCTTTGGAGGTCGCATCAGTGGCTGTGAGCCAAGCCAATGGGATGGCAGCACGTTTCATCATCCATTGTCACGTTCCTCAGTGGGGTTCAGAGAAGTGCGAAGATCAGCTGGAGAAAACCGTCAAGAACTGTCTGTCTGCTGCCGAGGAGAAGAAGCTCAAGTCGGTGGCCTTCCCTTCGCTACCCGCCGGACGAAATGGTTTTCCAAAGCAGACGGCAGCCCAGCTAATACTGAAGGCCATTTCCAACCATTTTGTCTCGGCAACCACCTCCTCTCTGAAGAACATTTACTTTGTTCTGTTTGACAGCGAGAGTATTGGGATATACCTGCAGGAGATGGCAAAGATGGACGCCAAGTGATGTCGAGTCGTGGGTTTGATTTCTTTTGAAAGTGTAACGCCTCGATGCAGCTCCGTTTTAGCTTGGCTTTGACTGTTTTCGTCGGCCTCGACGTCGTGGGAAGGTGAAATGAGTTGAACGTGAGCTTTAGCGGAGAGTGCATCCAGGCTAGTAGGAGCGTACTAAGTGGAGTGTAGTGCAGCTTGGTGAAAGATGTTGTAGGTATATGTTTTTGACAACAGATTATTTGAAGGTGTTTAAACAAGGATATTTGTGAGTGATGTACTGTACACATTTATGTTTCACTGTTCTCCTTTAAAGAAAAGACATTCATTTAGACTAGATCAACTTAATCTTCATCGTTTGCCATTTTTATCCTTAGAATAATCTTGTTTTTACATTCCATGTTCAGAGTTGAACTTTTGACCGTTGTTTTTGGCTAGATATCATGTGTGGTTTCTGACCATTTTGGtttatcaaacaaaaaaaaaaaagtgtttcttgttctgctttgaaataaaaaaatgttttacaccA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134323 lncRNA upstream 133896 4625603 ~ 4695842 (+) False si:ch211-250c4.5
TU134314 lncRNA upstream 204194 4583808 ~ 4625544 (+) False si:ch211-250c4.5
TU134315 lncRNA upstream 244772 4561648 ~ 4584966 (+) False si:ch211-250c4.5
TU134306 lncRNA upstream 357994 4471065 ~ 4471744 (+) True G90700
TU134586 lncRNA downstream 127970 4964702 ~ 4965015 (+) True G90888
TU134562 lncRNA downstream 166678 5003410 ~ 5013662 (+) True G90879
TU134605 lncRNA downstream 198627 5035359 ~ 5036116 (+) True G90905
TU134670 lncRNA downstream 340986 5177718 ~ 5178021 (+) False rab11fip5a
TU134687 lncRNA downstream 433869 5270601 ~ 5271199 (+) False ap5s1
XM_043255640.1 mRNA upstream 160722 4643112 ~ 4669016 (+) True si:ch211-250c4.3
XM_043255641.1 mRNA upstream 160722 4643123 ~ 4669016 (+) False si:ch211-250c4.3
XM_043255635.1 mRNA upstream 203286 4622938 ~ 4626452 (+) False si:ch211-250c4.5
XM_043254673.1 mRNA downstream 68834 4905566 ~ 4917155 (+) True pitx3
XM_043256067.1 mRNA downstream 92466 4929198 ~ 4931710 (+) True gins1
XM_043255962.1 mRNA downstream 120917 4957649 ~ 4962720 (+) True aifm2
XM_043255737.1 mRNA downstream 131441 4968173 ~ 4988224 (+) True LOC122356724
XM_043255738.1 mRNA downstream 136644 4973376 ~ 4988224 (+) False LOC122356724
TU134239 other upstream 585697 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 585697 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 585697 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 757839 4071806 ~ 4071899 (+) True trnai-uau_4
XR_006252399.1 other upstream 999997 3809053 ~ 3829741 (+) False pkdcca
TU134595 other downstream 155595 4992327 ~ 4997896 (+) False si:ch73-49p17.1
unassigned_transcript_1926 other downstream 2294694 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 2999458 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 3021966 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 3469754 8306486 ~ 8310824 (+) True G91833

Expression Profile