RNA id: XM_043256121.1


Basic Information

Item Value
RNA id XM_043256121.1
length 1853
RNA type mRNA
GC content 0.48
exon number 7
gene id mtrf1l
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18812271 ~ 18816117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAAAAAGAAGCTTCGTACAGTCTCTGGGTACATGTGAATGTTGCGGTTCATAGATGTCAACTGTAGGCTGCAATAAAGTTACTATGGTTGGAAGCCCGTTTGCTTGGTAAATGCTTGCTTTTGCCTTCAATCGCTCACTTTAAATACAGCACTTGAGGGGAGATGGCTGCGGTCTGCTTTAATAAGAGCCTTTCATGCGCAGCCAGGCAGCTGCTGAATGCGACACCGTTCAGGACAATCAAAACACACTTTAGAGGATCAGTATGCAGATGTTTAGCCATTCACAGGACTGTTAACGGCACAATAGCACACTCTAAACGAGCCTTTCAGACATCCCGCTCCGCGATGCTCACTAAAATACTGTCCGTGGAGGAGGTCTTCAACAAGAAGTCTTTGCACGACTACCTGAAGAAGAAGGAAACGGAGTATAACGCGTGCTTGCAGTCCCTCAGTGCTGAAAACCAAACGCTGGACGACGAGGACGTGAAAATGAAAAGGACTAACCTCTCTGCGCTCGGGCCTTTGGTCCAGAATATCAGAGAgttagaggagaaacagaggGAGCTGGAGGACACGAGGGACTTGTTGAAAGATAACGACCCAGAATTACACGAGCTTGCGGAGTCGGAGAAGGAAGCCTGTCTGGCAGACATTCAGGAGCTCAAACAAAAGATTTTATCTCTTCTGATCCCAGAGGAGGAATCAGACCTGAGTGATCTGGTCCTAGAGGTCACCGCTGGGGTCGGAGGTCAAGAAGCCATGCTCTTCACCGCAGAGATCTTCGATATGTATCAGAACTTCGCTGCTTTCCATGGCTGGAGCTTCGGCTTCCTGGAGGTGGCGTCCAGCGAGCTAGGGGGCGTCCGACGTGCAGCAGCCAGCATCAGTGGTCCGCTCAGCTATAAAAAGTTAAAGTTCGAAGCTGGGGTCCATCGTGTCCAGAGGGTCCCGAAAACAGAGAGCAAAGGTCGCGTGCACACCAGCACCATGACGGTGGCCGTCCTTCCCCAGCCCACCGAGATCTCATTTACCATCAACCCTAAAGATCTGAGGATCGAGACGAAGAGGGCCAGCGGTGCGGGAGGACAGCACGTGAACACCACCGACAGCGCCGTGAGGATCATGCATCTCCCCACAGGCACAGTGGCTGAATGTCAGCAGGAACGCTCCCAGATCAAGAACAAAGAGACAGCCATGACGTTACTGCGAGCCAAACTTTACAGCGCCCAGCTGGAGGAGGAGACCAGTAAGAGATACCAGGCTCGAAAACTACAGATCGGCACCAAAGGCAGATCAGAGAAGATCAGGACTTATAACTTCTCTCAGGACCGGATCACGGATCACAGGATTGGAAAAACCATTCACGACGTGCATGGATTTTTACAAGGAGAGGAACTGCTGGAAGAGATGATCGTGTTTTTGCAACAGTTTTCCGAACAGGAATCGCTTATGGACCTCCTTGAAGACGATGATCAGAATCAGTAGTTGTTTGCTGGAAATAAAGAGATGTGTAAAAGTTTGGCTTTGTGGGTGTGAGACTGAAGCACGGGCgtctgagtaaaaaaaaaaagagcgtaGTGTGTCTCACTATCCCTCTGAAGAGTTTCTCAAACACTCTTTGCTTTCTCTTGAGCTTTTGCACAGTGGTGTGAAATGCTTTGGgggctgtttgttttgttttcagcgGCTGGTTTCCAACAGTGTAAGAAACgctgtttaaattttatttttattttctttagcaaGTCAGAAAAGTGCTATTTCTAGCTCATAAGTGATTCATATTTTGGAATCGAATGTAACGCGAAtgtccaaataaataaatatttatgacttCTTCGGACCTGAAAA

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140243 lncRNA upstream 26822 18780401 ~ 18785449 (+) True G94816
TU140197 lncRNA upstream 180553 18545352 ~ 18631718 (+) True G94776
TU140199 lncRNA upstream 180553 18545352 ~ 18631718 (+) False G94776
TU140198 lncRNA upstream 180553 18575490 ~ 18631718 (+) False G94776
TU140210 lncRNA upstream 285640 18526402 ~ 18526631 (+) True G94787
TU140367 lncRNA downstream 13199 18829316 ~ 18829539 (+) True G94883
TU140407 lncRNA downstream 84501 18900618 ~ 18933128 (+) False G94913
TU140404 lncRNA downstream 84551 18900668 ~ 18956194 (+) False G94913
TU140405 lncRNA downstream 84551 18900668 ~ 18955920 (+) False G94913
TU140406 lncRNA downstream 84551 18900668 ~ 18934472 (+) True G94913
XM_043254553.1 mRNA upstream 35337 18773187 ~ 18776934 (+) False LOC122356089
XM_043254552.1 mRNA upstream 35337 18773188 ~ 18776934 (+) True LOC122356089
XM_043255003.1 mRNA upstream 40448 18744007 ~ 18771823 (+) True tmem63ba
XM_043256119.1 mRNA downstream 46 18816163 ~ 18819554 (+) True fbxo5
XM_043255668.1 mRNA downstream 22507 18838624 ~ 18895972 (+) True anapc1
XM_043256189.1 mRNA downstream 244862 19060979 ~ 19099036 (+) True acoxl
XM_043256187.1 mRNA downstream 340165 19156282 ~ 19170027 (+) True lhcgr
XM_043256184.1 mRNA downstream 355247 19171364 ~ 19207995 (+) True mertka
TU140195 other upstream 180553 18545352 ~ 18631718 (+) False G94776
TU140212 other upstream 274828 18536892 ~ 18537443 (+) True G94789
TU140175 other upstream 372688 18439173 ~ 18439583 (+) True G94760
TU139910 other upstream 1236333 17560296 ~ 17575938 (+) False G94564
TU140499 other downstream 340179 19156296 ~ 19162325 (+) False lhcgr
XR_006252404.1 other downstream 741032 19557149 ~ 19589504 (+) False foxn2a
XR_006252347.1 other downstream 801895 19618012 ~ 19665614 (+) False LOC122356529
TU140828 other downstream 1131413 19947530 ~ 20004002 (+) True G95223
TU140845 other downstream 1261168 20077285 ~ 20102120 (+) True G95239

Expression Profile