RNA id: XM_043256122.1


Basic Information

Item Value
RNA id XM_043256122.1
length 1029
RNA type mRNA
GC content 0.50
exon number 3
gene id prph2b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3761833 ~ 3764601 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTTTGATGCCTATAAAATTTGACTTGGCCAAGCGAGTCAAGCTGGCCCAAGGACTTTGGCTCCTGTACTGGCTCTCCGTCATGGCTGGGGTCCTCATCTTCAGCATGGGGATTTTCTTCAAGATTGAGCTGCGCAAAAGAAGCGAGATGATGGATAACAATGAGAGCCATTTTGTGCCCAACCTGCTCATTTTGGTTGGAATCGTGACCTGTGTTGTCAACGCATTTGGGGGCAAAGTGTGCCATGACTCCCTTGACACAATCAAGTTCACCAAGTGGAAACCAATGTTGAAGACCTACATGAGTGGATGTGTGGTTTTCTGCATCGCCCTTTTTGTCACGGCTCTGCTCTGTTTCTTGATGCAGATCTCTCTGCATTTCGCCCTGGCTGAAGGCCTGAAGAATGGAATGAAGTACTACAAAGATACAGACACGCCAGGACGATGCTTCATGAAAAGAACCCTAGATATGACCCAGATTGAGTTCCGCTGCTGTGGTAACAACAACTACAAAGATTGGTTTGAGATCCAGTGGATAAGCAACCGCTACCTGGACTTCAGCAATGATGAGGTTAAAGACCGTGTCCAGAGCAACGTGGAAGGCAAATACTTGATGGAAAGCGTTCCCTTCAGCTGTTGCAACCCTGGTTCTCCTCGTCCATGTATCCAACATCACCTGACCAACAACTCCGCTCACTACAGCTACGACCACCACACTGAGGACCTGAACATCTGGACCAGAGGCTGCCGTGAGGCCCTGGTGTCCTACTATGGGGGCATGATGAACAGTATTGGTGCTTTCGTGCTGCTCTTCATTATTATGCAGGCTGTAGTGACGGTTGGTCTGCAGTACCTGAACACCTCGCTGGACACCCTGGCCGACCCAGAGAATCCTGAGAGCGAAAGTGAGGGATGGCTGCTGGAAAAGAGCGTGAAGGAGACATTTTCTGACATCATGACAAAGATCACGTCGCTGTTTAAAGGCAATCAGGTACAGGAGGGAGATGCAGAAGCGGCTCCCACATAA

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17343 PRPH2, TSPAN22; peripherin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134057 lncRNA downstream 46987 3713924 ~ 3714846 (-) True G90535
TU134055 lncRNA downstream 49294 3711396 ~ 3712539 (-) True G90533
XR_006252403.1 lncRNA downstream 183097 3568616 ~ 3578736 (-) True LOC122356977
TU134020 lncRNA downstream 310420 3450994 ~ 3451413 (-) True G90505
TU134019 lncRNA downstream 311100 3450424 ~ 3450733 (-) True G90504
TU134165 lncRNA upstream 164678 3929279 ~ 3930527 (-) True G90622
TU134166 lncRNA upstream 166215 3930816 ~ 3931096 (-) True G90623
TU134167 lncRNA upstream 167103 3931704 ~ 3932834 (-) True G90624
TU134168 lncRNA upstream 168954 3933555 ~ 3933766 (-) True G90625
TU134169 lncRNA upstream 169612 3934213 ~ 3934450 (-) True G90626
XM_043255850.1 mRNA downstream 218157 3482958 ~ 3543676 (-) True qkib
XM_043255375.1 mRNA downstream 294776 3454742 ~ 3467057 (-) True LOC122356548
XM_043255508.1 mRNA downstream 326253 3426588 ~ 3435580 (-) False timm23b
XM_043255507.1 mRNA downstream 328295 3426588 ~ 3433538 (-) False timm23b
XM_043255506.1 mRNA downstream 328299 3426588 ~ 3433534 (-) False timm23b
XM_043255556.1 mRNA upstream 187996 3952597 ~ 3955955 (-) False wu:fj16a03
XM_043254600.1 mRNA upstream 251432 4016033 ~ 4022400 (-) True LOC122356122
XM_043255866.1 mRNA upstream 288142 4052743 ~ 4055413 (-) True hcar1-3
XM_043256321.1 mRNA upstream 297871 4062472 ~ 4067606 (-) True haao
XM_043256157.1 mRNA upstream 476926 4241527 ~ 4244433 (-) True LOC122357001
TU133931 other downstream 739971 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 1134676 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 1176502 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 1516755 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 2069898 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 908365 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 908365 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 908365 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 908365 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 908365 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile