RNA id: XM_043256125.1


Basic Information

Item Value
RNA id XM_043256125.1
length 2088
RNA type mRNA
GC content 0.44
exon number 9
gene id yipf3
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3412331 ~ 3416932 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCGTCAAACATTTCCTCGTCATTACGTCAAAATTTTACCCCAGCGCTTTACAGCTGGCAAAATAATCCGCACGAACCATTTTAATGCTTAACTACAATGAGCGCCCGAATCAAAATATAGACAGTAGCATCTTAAAATTCCAGCCGCTAATCTTTCTGATTGTATTCTTGTGCCTCTTAGTGCAAAACAATGTCGGCATCACAAGGAAGCACAAACACGAATACGGAACCATGGGGGAGTTTTGATGACAACATTATCCAGGGCAGCGGTTCGGCAGTGATAGACATGGAGAATATGGATGACACCTCTGGTTCCAGCTTTGAGGATATGGGGGAGATGCATCAGCGTAtgaaggaggaagaggaggtgaCGGCCGAGGCAGCAGCGACGGAGGAGGACAACGGAGAATATGGAGAGTTCCTCGGGATGAAGGGCTTGAAGGGACAGTTGGGCAGACAGGTTGCTGATGAGGTATGGCAGGCAGGAAAAAGGCAGGCATCGAAAGCGTTTAATCTCTATGCCAATATTGACATTCTCCGGCCGTACTTTGATGTGGAGCCTAATCAGGTCAGGAACAGGTTGGTCGAATCCTTGATCCCAGTCCGAATGATCAACTTTCCGCAGAAAGTTGCTGGAGAGCTGTATGGACCAATGATGCTGGTGTTCACGATGGTGGCTATTCTGCTCCACGGCATGAAGACATCGGGAACTGTCATTAGAGAGGGTACTCTGATGGGAACTGCCATCGGAACCTGTTTTGGATACTGGCTGGGAGTGTCCTCCTTCATCTATTTCCTGGCTTACCTGTGCAATGCTCAGATTACCATGCTGCAGATGTTGTCTTTGCTAGGTTATGGTCTCTTTGGCCACTGTATGGTCCTTTTCATCACGTACAACGTCCACTTCCACTCTCTCTTCTACATTCTCTGGCTGGTGATCGGAGGACTCTCGACTCTACGCATGGTGGCTGTGCTGATTTCCCGTACCGTCGGTCAGACACCTCGCCTCATCTTGTGTGGAACTCTGGCCGCTCTTCACATGCTCTTTCTGCTCTACCTGCACTTTGCTTATCATAAGATGGTCGAAGGTATTCTCGATACCTTGGAAGGACCCAACATGCCACCCATCCAGAGAGTGGCCAGAGATGTTCCCGCTGTTGCAAATGCTGTTGTAAATGCCACCATCAAGTCAATAGCTGCAGTCGTACAGTCACAGTGATTACATATTCGTCTTCTTGGATTGGACGCAGCGTCCAGTGAGGCGGGTGTATATACGTAGGGTCTGGGGAACGAAACAAAAACATGGAGCAGTCTCTGTTGAGTTTAAATCTCATACGTTGTTCCTGACGCTGTCATACAGACCTAAAAAGATGTTGTTGGTCTAGATGGCTTAACTTGATTTGGGCTCATGTTATTATGAGACACACACTATATCTCGTTCACTCTACACTTGTCTTAATACTTTTTTGCTAAGGGTTACAGTCTATATGACCTGCTAATATTAGAACGGTTTATTCAGAATGTGTATGGATTCCTTAAAGATGCTGATACTAATCATTTTTCCTCAAAAACCCTGTTGACATTAAATGCAGCTGGATGTTTGCACTCCGTGAGAGTGCACTGATTGGACCGATTGTCTTCACGAACTCTCTGTTACCGAGTGACGTCACACAACACTTCTGCTTTTagattgttgctttttttttttcttttagatattttcagTGTCAAAATAAGTCAAGGTTCGATAGAGAAATCTTGATCTGAAGGCCAGGCGCATAGAAATACAATGGTATTTTATGCGAAGACGAGAAAGATTGTTATGGTGCATGCAATCTTTTTTTCCTAATCCATATTTAACCAGCCATTGTGGTGCAGTCTGATTCCTGCTATTTAAAGCTATGGTTGGGGGTGAGGGTTTCCTGCTCTCTCATTATGTTGTCTTTTACATGCGAGCTTCTTATTTAAAGGGTTCTtgtaaagagaaaataaagaaacactGTCGTCCTTATTTGTGATCAGAGGTGTCAtgctataatatatttaatacttgGAATTTAGACTCCAAATAAAGTGATTAAACAATA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22941 YIPF3, KLIP1; protein YIPF3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133983 lncRNA downstream 11265 3370165 ~ 3401066 (-) True G90482
TU133949 lncRNA downstream 126925 3283179 ~ 3285406 (-) False dlk2
TU133942 lncRNA downstream 169689 3015179 ~ 3242642 (-) True G90447
TU134012 lncRNA upstream 5821 3422753 ~ 3433474 (-) True timm23b
TU134019 lncRNA upstream 33492 3450424 ~ 3450733 (-) True G90504
TU134020 lncRNA upstream 34062 3450994 ~ 3451413 (-) True G90505
XR_006252403.1 lncRNA upstream 151684 3568616 ~ 3578736 (-) True LOC122356977
TU134055 lncRNA upstream 294464 3711396 ~ 3712539 (-) True G90533
XM_043254626.1 mRNA downstream 2686 3401937 ~ 3409645 (-) False lrrc73
XM_043254624.1 mRNA downstream 2690 3401937 ~ 3409641 (-) True lrrc73
XM_043254625.1 mRNA downstream 2693 3401937 ~ 3409638 (-) False lrrc73
XM_043255951.1 mRNA downstream 113782 3281337 ~ 3298549 (-) True dlk2
XM_043255950.1 mRNA downstream 133950 3276168 ~ 3278381 (-) True mea1
XM_043255508.1 mRNA upstream 9656 3426588 ~ 3435580 (-) False timm23b
XM_043255507.1 mRNA upstream 9656 3426588 ~ 3433538 (-) False timm23b
XM_043255506.1 mRNA upstream 9656 3426588 ~ 3433534 (-) False timm23b
XM_043255375.1 mRNA upstream 37810 3454742 ~ 3467057 (-) True LOC122356548
XM_043255850.1 mRNA upstream 66026 3482958 ~ 3543676 (-) True qkib
TU133931 other downstream 390469 2990418 ~ 3021862 (-) True G90445
TU133704 other downstream 785174 2626328 ~ 2627157 (-) True G90311
TU133689 other downstream 827000 2584196 ~ 2585331 (-) True G90304
TU133469 other downstream 1167253 2151837 ~ 2245078 (-) True G90161
TU133318 other downstream 1720396 1684449 ~ 1691935 (-) True LOC122356758
XR_006252267.1 other upstream 1256034 4672966 ~ 4689168 (-) False LOC122356061
XR_006252269.1 other upstream 1256034 4672966 ~ 4689168 (-) False LOC122356061
XR_006252268.1 other upstream 1256034 4672966 ~ 4689168 (-) False LOC122356061
XR_006252266.1 other upstream 1256034 4672966 ~ 4689168 (-) False LOC122356061
XR_006252265.1 other upstream 1256034 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile