RNA id: XR_006252404.1


Basic Information

Item Value
RNA id XR_006252404.1
length 929
RNA type transcript
GC content 0.63
exon number 5
gene id foxn2a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 19555598 ~ 19590284 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGTTTGGTAGCGTTGCCGTGCGGCGTGATCTGTGCGCAGCGCGGATGGAGGAAACAGTTTGAGCAGCAGAACGCAACGACTACCGACGCGCTTCAGCGGAAAACGGCTCGGCGTGTTTCAGCCAGACGTCCTTGATTTAATGGGTCCCATCATCGGGATGTCGCCGGATAAGAAAGCCGAATCGCCGGGTGCGGCGGGGGAGCGGGCGGGCCTCCGCGGGGTTTGCGGGACGCTCCCCGAAGCCGAGTGCGCCTCCGGTCCTCTGGCCACCAGCCTGGACCGCAGCTCCGGAGACGAGGAGCTCACCAACCTCAACTGGCTCCACGAGAACCTGCTCCAGAACTTCACCCTGGGCGGCCCCGAGGCCCAGTCCAGCCCCGGGCCGCTCTTCTACATCGAGGGCAGCCCCGGCGCCTCCGCCGTGTCCTCGGGAGCGGTCCGCGCCGGCGACTCCGTCAAGTCCAAGCCGCCCTTCTCCTTCTCCCTGCTCATATACATGGCCATCGAGCAGTCGCCCAGCAAGTCTCTGCCCGTGAAGGACATCTACGGCTGGATCCTGGAGCACTTCCCGTACTTCTCCAGCGCCCCGACAGGCTGGAAGAACTCCGTGCGCCACAACCTGTCCCTCAACAAGTGCTTCCGCAAGGTGGAGAGGAGCCTTGGGAAGGTTAATGGGAAGGGCTCTCTGTGGTGCGTGGACCCCGAATACAGACCCAATCTGATCCAAGCCCTGAAGAAACAGCACTTACCCTCTGCCCACTCCTTCTGCACACCCCCTGCTTCCCCACCCAGAGTCTGACATTGATGCTGCCACTGCTATGATGCTCTTAAACTCTGCCCCTGGACACCATAGTGACCCATGTGACCCGGACAGCCCCATAGACCTCTCTCGCCCAGATTCGGTCCTGGTGAGCAGCGACCCGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140634 lncRNA upstream 88069 19468841 ~ 19469080 (+) True G95075
TU140594 lncRNA upstream 128196 19410995 ~ 19428953 (+) True G95045
TU140595 lncRNA upstream 129164 19425638 ~ 19427985 (+) True G95046
TU140566 lncRNA upstream 192720 19363582 ~ 19364429 (+) True G95020
TU140567 lncRNA upstream 192720 19363582 ~ 19364429 (+) False G95020
TU140702 lncRNA downstream 90141 19679645 ~ 19680681 (+) True G95120
TU140710 lncRNA downstream 93918 19683422 ~ 19688900 (+) True G95123
TU140782 lncRNA downstream 268183 19857687 ~ 19858002 (+) True G95191
TU140783 lncRNA downstream 269615 19859119 ~ 19859343 (+) True G95192
TU140785 lncRNA downstream 273025 19862529 ~ 19868111 (+) True G95194
XM_043254964.1 mRNA upstream 51720 19494929 ~ 19505429 (+) True msh6
XM_043256182.1 mRNA upstream 298786 19249531 ~ 19258363 (+) True LOC122357010
XM_043256183.1 mRNA upstream 298786 19249531 ~ 19258363 (+) False LOC122357010
XM_043256195.1 mRNA upstream 307760 19247599 ~ 19249389 (+) False zmp:0000001006
XM_043256193.1 mRNA upstream 307760 19247600 ~ 19249389 (+) False zmp:0000001006
XM_043255319.1 mRNA downstream 28508 19618012 ~ 19667441 (+) True LOC122356529
XM_043255321.1 mRNA downstream 28508 19618012 ~ 19667441 (+) False LOC122356529
XM_043255322.1 mRNA downstream 28508 19618012 ~ 19667441 (+) False LOC122356529
XM_043255320.1 mRNA downstream 28508 19618012 ~ 19667441 (+) False LOC122356529
XM_043255325.1 mRNA downstream 28508 19618012 ~ 19658726 (+) False LOC122356529
TU140499 other upstream 394824 19156296 ~ 19162325 (+) False lhcgr
TU140195 other upstream 925431 18545352 ~ 18631718 (+) False G94776
TU140212 other upstream 1019706 18536892 ~ 18537443 (+) True G94789
TU140175 other upstream 1117566 18439173 ~ 18439583 (+) True G94760
TU139910 other upstream 1981211 17560296 ~ 17575938 (+) False G94564
XR_006252347.1 other downstream 28508 19618012 ~ 19665614 (+) False LOC122356529
TU140828 other downstream 358026 19947530 ~ 20004002 (+) True G95223
TU140845 other downstream 487781 20077285 ~ 20102120 (+) True G95239
TU140959 other downstream 776721 20366225 ~ 20494176 (+) True G95327
TU141317 other downstream 1362552 20952056 ~ 20956174 (+) False G95558

Expression Profile