RNA id: XM_043256160.1


Basic Information

Item Value
RNA id XM_043256160.1
length 5403
RNA type mRNA
GC content 0.49
exon number 24
gene id nsd2
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5795240 ~ 5807876 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTCCTCTGCTCAATTCATCGAGCGGTGATCTGTGTCGCTTTGCCATTTTtcgaaataaaaacaaaaacggaTAATCTCGGAATCTCATGGCCTCATCTTAAACAACGAGCCTGCGGCGAAGTTCGGAGTGCGCTGCGGATAAGTGAAGATGTTCGACGGAGAGTCGGCCGCGAAGAGAGTGATATTTGAAAAGGCCGGTTGAATTGTGCCGTCGCGTCTCAGCCAATCGGATgccCCTGTTTAGTAATGACAGATAGTAAGGGGACATCACTGCCTGAAATGCCAGAGCCCAGGAGTCCTACCACCATGAAACAGCTGTCTGACTCACCTGGTGGACGAAAGGGTCGGGGTGATGGGAGCACTGACCATACCATGCTCATGGATAAAGCCGCTACACCTCAAGAGAGTGTTTTGCAGATGATTGGCAGTCACGGTCATAACCACACCCATGAGCGGCTAAAGGACCTGACTTCCCGCTTGTTAAATGGCGATCAAGACAAAATCCCAAAGCTCTGTGCTGCCACGGCTGCGCAGCCTCTTCTCAAAGGTGTGGAACCTGTTCCTCAGCATGCCAGCCCTCCGAGGAAGTCCAGTGTTTCTCCAGAactcacttttaaaataaccaaatgTGTGGTAAATTTAGGTGGGAAGACCAACCGATACGGGGCGGATTATGCAGAGGAGGGAACCGAGGAGACAAATGCACCTTTGAGACTATCCGAAGATTTTCTTGCCTCTCCGACTGCCAGGAGAGAAAGACGGAAGAAGAAAGGGGGGCTTGTGAGGAAGAGAACTCCCCCAAATCGCAGAGAGTCCATTTTGAGCCCTGCTGAGAGTTCTGATCAGTCCCCATTAATGCACACCGCCATAAATTCTAGTGACCTCACCACTGAGCCGTGTGTTCTCCTCGCTGACGAGCAGACTGACGGAGAGATACCTGCTAGTGTAAATCCCATCCCAACCCAGGGGCCTGTGTCTGACTTCGAAGTTAATGATTTTGCACAGGGTGTGGATGATGTGGAAGTGAATGGTATAGAGACAGAACCTTGTGTGCAGTTCTCAGTAGGCGATGTTATCTGGGCCAAAGTGTCTGGATACCCTTGGTGGCCGTGCATGATCACTACAGACCCGGAGATTAACATGCACTTTAGGTCAAAAGTGAATAGCCGCACAGGATTATTGTACCATGTACAGTATTTCGGAAATGCTCCAGAGAGAGGATATGTTTTTGAGAAGAGCATGGTCACCTTCTCAGGAAAACACCAATACCAGTCACTTAGCCGGAGCAACAAACTACCCATTGATATTAGTGGACGGAagATATTGTTGATGTGCTCTCTACAGCGGGCAATTCCTCGTAAGTATCGGGAACAATGGGAGACAGGTGTTTCACAGGCTACAGAAGCGTTGGGTTTACTAATAGAGGAGCGATTGGccaaattcagctttgtttaTGAAAATGGGAAAGCCCAGTTCAGTCCTCGCATGCTACAAGAGCTTCAAGCACAGAGCAAACAGGGACCACAGCAAGACCAAGATCGGAGGGAGTCTCAGGAACTTGTTAGCCTGACTCCTCCTGACTCTACTCATTCAAGCCCCAACTCCACAACAACTACCATCGTCCCAGACCTCTTCTCCCACCCCACAGACAGCAGCACTTCAACAGAGAAAAACACCCTCCCCAAAAAAGCACCTAAAACCTCAGTGAAAAGGGAGCAGCACGGCAAAATACTGAAGTGGAAGAAGACCGAAGCTTCCTCTGTAAAAGATGTCCCTGGGTCTACTGTTCAGATTCACTGCACTGCATCAGAACACCAGagtaaaataaagacaaagtCTGGCAAACGGGCCTACCGGAAAaagAAGGACCTGCTCTGTATTGATCTAGACCTTCAGCCAAAAGCTCCTCAGAAGAAACCAAGACAGCTCAGACAGAAGTTTCCTGCTGCACCAAATTCAGTAAAGAAGAGGAAAGTAAAAGCTGGTGTCAGTATCTCTAACACTTTAGGCACAGTGTCCAGTAATCCTGGATTTTCAGaTATAAAGTTATTAGCACCAAGCCCAAAAGTCTTGGAGGAAGATGTTTCTAAAGGAAAGAAAATAGGCTGCAAACGCTTACGAGAATCTAAGGATGATGTGGCCCTGCAGCCTAAAAAGAAAACCAAGCTtgaaaaagagtttaaaaagcAGAAAGGCCAAAAGAATGCACCATCAGATGAGGCTGCTGTTGGTAAACCCAGGGGCAGGAGGCAGAAAGCAGACAGGGATGACAAAacgaaacaaactaaaaaagcTCCAAGGGAGCAGTCTCCTGCTAAAGTCAAGCGTGTCAGGAAAAGGAAACAGGAGTCAGGCAGACAATCTTTTCCTGTCTCATCCAAAAAGCACCGCCCATCATCGTCTCCTGAGCCAGAgAGACCTGATTCTCCCAGTGACAGTACAGACGAATCGCATCCCTCAAAGAAGACAGAACGAACTGCTGGTGCCaagaaagaaagtgtgtgtcTGGTGTGCGAGCAGACCGGGGAGGATCTGGTCGTGTGTGAAGGACAGTGCTGTGCCTCATATCACCTGCACTGTATTGGGCTGGATCAGTCAGTAGAAAAGGTGCTCTGCTCCTCTTGCAGATCAGgggtgcatgtgtgttttaccTGTAAGAAGTCTGAAGGAGAGGTCCGGCGTTGTTGTGTGCTCCACTGTGGGCGTTTCTACCACGAGGCATGTGTGCGGTTGAGCGCTCTGACGGTGTTTGAGAACCGTGGCTTCCGCTGCCCCCTGCACACCTGCCTCAGCTGCCACTACAGCGGCCGTGGTGCTGGCAAGGCCACCAAAGGAAAGATGATGCGTTGTTTGCACTGTCCCGTGGCTTATCATGTTGGAGACCTTTGTGTTGCTGCAGGGAGTGAGACGATCACTTCCTCTGCCATTGTATGCACGAACCACTTCAGGCCTAAGAAAGGCTACAGTCACCACTCTCACGTCAACGTCAGCTGGTGCTTCATCTGCTCGAAGGGTGGCCGTCTGCTGTGCTGTGAGTCATGTCCAGCTGCGTTTCACCCCGACTGTCTGAACATCGCTATGCCCGATGGCAGCTGGTTCTGTAACGACTGCCGCTCAGGGAAGAAGCCTAAATACAGAGATGTCATCTGGGTCAAACTTGGAAACTACAGATGGTGGCCTGCAGAGATCCGTCACCCTAAAAACATCCCGACCAACATCCAACACCTGCGTCATGAGATCGGAGAGTTCCCGGTGTTCTTCTTTGGCTCTAAAGACTATTTCTGGACACACCAGGGCAGAGTCTTTCCGTACATGGAGGGAGACAGAGGAAGCAAATATCAGCATACTGGCATTGGAAAGGtctttaaaaatgCCCTGCTGGAGGCTGAAGCTCGTTTTAAGGAGATCGAAATGGAGAGGGAGGCCAAAGAAGCTCAagagaacaacaaaaaacctcCTCCATACAAATACATCAAGGTGAATAAGCCTTGTGGGCGAGTACAGGTCTACACCGCGGACGTCTCTGAGATCCCGAAGTGTAACTGTAAGCCGTCAGACGAGCGCCCCTGCAGCTTTGAGTCCGAGTGTCTAAACCGCATGCTGTTGTACGAGTGCCATCCTCAAGTGTGCCCTGCTGCAGACCGCTGCCAAAACCAAGACTTCACCAAACGCCTCTACCCCGAGACCAAGATCATCCGCACCGCAGGCAAAGGCTGGGGCCTGGTGTCACTGCGAGACATCAAGAAAGGAGAGTTTGTGAATGAATACGTGGGTGAACTGATAGACGAGGAGGAGTGCAGAGCCAGAATCAAATACGCTCAGGAGAACAACATCACACATTTCTACATGCTCACTATTGACAAGgatcGGATCATAGATGCTGGACCCAAAGGGAACTACTCTCGCTTCATGAACCATAGCTGCCAGCCCAACTGTGAGACTCAAAAATGGACCGTTAATGGAGACACACGCGTTGGCCTGTTTGCTGTCTGTGACATCCCTTCTGGCACAGAGCTGACTTTTAACTATAACCTGGACTGTCTGGGGAATGAAAAGACTGTGTGTCGCTGTGGAGCGCCCAACTGCAGTGGTTTCCTAGGAGACCGACCCAAGAATGGTCATTCCTCTGAGCCCAAAGCCAAGCATCAAAAGAAAAAGCCCAAGAGAAGGAAATCCCGGAATGAAGGCAAGAAGTCTGAGGACGAGTGTTTCCGCTGCGGTGACGGAGGAGAGCTGGTTCTGTGTGATAAGAAGGGCTGCACCAAAGCCTATCACCTCTCCTGTCTGGACCGTACCAAGAGACCATTTGGTCGCTGGGACTGTCCCTGGCATCACTGTGACGTGTGTGGAAAGAACTCGGATGCTTTCTGCCAGCTCTGCCCTAACTCTTTTTGCAAGACTCACCAGGAGGGGGCGCTGCGGTCGCACCCGCTCACGGGCCAGCTCTGCTGCCAGGAACACGAAGACTCTGATATCCGCCCTCAGACGGAGACCCCGGTGGAGCACAGCGCTGAAGTGCCCTCATCCACCAAACCACGCAAGTACAAGCGCAGAGGGACGGCCACAGCCGCCAGCAAAGAGCCTCTCAAGAAGAGGTCCAGAAAGACAGCAGAGGTGTAGTGGGATTGCGAACTATGGAACCTGCCTCTCCTCTCACTAATCCCGCCCTCCCCTTCCTCAGCTCCTGCCCCAAATGATTGAGTGATATTGACGTCGCGTGACTGTTCTGCCAAGCTGAAAGCACTGTACGTGTCTGATCAGGGAAGCGTGTTAACACTGTAGAGCTCGTCTGAGCTGCTGAATCAGGTCCCCTCCACTCACTCTGCCTCCTCAGATTccactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgagtgtgtgtgcatgcactgACGAATAGACGACAGAGCCGACAGACCGAACACCTCATAAACAGCATTACAGACGCCAAACTTGAAATCGttttacatctttaaaaatctcgacatagatttttttttttttttttttttttttacagtagttaTGTATATGGAAATGTATATGAAAGaccaaaattataataatactggATTTATTGTTAGTAACAGGTGCCAGgagtcttgtttttgtttttaacaagtgGTATCTTTAAATAAGACACTATGGGTAGCCCTTGAATTACAATTTTAGAGTCAGTTCATTTAACTATAGagcagcacattttttttttttttgtttgttttttttttttttggtaatagcTTGGTTCATTtttgtagctcatttttgagtTAACCAGAATGTTAGGATGTTAAATCTACCTATTCAGAGTTTTAAGGCAAATCATGATGGGCTTCTTGTGTTACTTACAagaaataaagctttttaaagcagttatgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134973 lncRNA upstream 25722 5769290 ~ 5769518 (+) True G91127
TU134972 lncRNA upstream 26716 5768174 ~ 5768524 (+) True G91126
TU134970 lncRNA upstream 30029 5764706 ~ 5765211 (+) True G91124
TU134768 lncRNA upstream 197895 5541045 ~ 5597345 (+) False G91003
TU135040 lncRNA downstream 65131 5873007 ~ 5876739 (+) True G91174
TU135044 lncRNA downstream 116664 5924540 ~ 5926325 (+) True G91178
TU135045 lncRNA downstream 118482 5926358 ~ 5926748 (+) True G91179
TU135046 lncRNA downstream 119958 5927834 ~ 5928133 (+) True G91180
TU135032 lncRNA downstream 143354 5951230 ~ 5952517 (+) True lamtor3
XM_043255787.1 mRNA upstream 54350 5708521 ~ 5740890 (+) True fgfr3
XM_043254888.1 mRNA upstream 220807 5567502 ~ 5574433 (+) True ky
XM_043256276.1 mRNA upstream 363892 5344526 ~ 5431348 (+) False gfra4a
XM_043256275.1 mRNA upstream 363892 5344528 ~ 5431348 (+) True gfra4a
XM_043256126.1 mRNA upstream 530353 5261037 ~ 5264887 (+) True ap5s1
XM_043254815.1 mRNA downstream 122321 5930197 ~ 5935584 (+) True lrit3b
XM_043256229.1 mRNA downstream 128525 5936401 ~ 5946902 (+) True LOC122357047
XM_043256152.1 mRNA downstream 143341 5951217 ~ 5952419 (+) False lamtor3
XM_043254562.1 mRNA downstream 174642 5982518 ~ 5985958 (+) True commd8
XM_043255826.1 mRNA downstream 270341 6078217 ~ 6087501 (+) True pprc1
TU134595 other upstream 797344 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1551199 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1551199 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1551199 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 1723341 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1323550 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 2028314 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 2050822 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2498610 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2858392 8666268 ~ 8683052 (+) False pcnx2

Expression Profile