RNA id: XM_043256177.1


Basic Information

Item Value
RNA id XM_043256177.1
length 2517
RNA type mRNA
GC content 0.48
exon number 19
gene id mlh1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16564308 ~ 16570793 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGCGCTCGCCATTCGCGGGTTTCGCGGGCGTCTCGTGAGACGTAAACAAACATTCACGTGCCTTCGAAAGAAAGCGCTTGTGTTTGATATAGCGAAGGAGTGCCGGTTCATGTCAGCGCGTTTACTTCTCGTTTAGTGAATGAGTGAGAGTTCATCATGGCGGGAGTCATCCGCAGGCTCGACGAGACTGTAGTAAACCGCATCGCAGCAGGAGAGATTATCCAGCGGCCTGCCAATGCTATCAAAGAGATGATGGAGAACTGTTTGGACGCAAAGGCCACAAATATCCAGATAACGGTGAAAGAGGGCGGACTGAAGCTCATCCTCATTCAGGACAACGGCACTGGCATCAGGaAAGATGATATGGAAATAGTCTGTGAACGTTTTACAACCAGCAAGCTTCAGTCTTTTGAGGACTTGTCGTCAATCGCAACATATGGATTCAGAGGAGAGGCTCTGGCCAGTATAAGTCACGTAGCCCATGTCACGATCACCACTAAAACAGCCGATGCAAAATGTGCCTACAGGGCCAATTACTGTGATGGGAAGCTGAAAGCTCCTCCCAAACCCTGTGCTGGAAACCAAGGGACTTTAATTTCTGTCGAAGATCTGTTCTATAATGTGTCTACACGACGGAAAGCCCTGAAGAGCCCCAGTGAAGAATATTCCAGAATCGTCGAGGTTGTGAGCAGATACGCCATTCACAACTCCGGGAAAAGCTTTTCTGTCAAGAAGCAAGGTGAGATGGTCGCGGATGTGAAGACCCTTCAGAACGCCTCTGTGCTGGACAACATTCGTGCTGTGTTTGGTGTAGCTGTTAGCAGGGAGCTGATTGAAGTTGAGTGTGAAGATCAGAaacttgcttttaaaatgaaggGCTACGTCTCCAATGCCAACTACTCTGTCAAGAAATGCATCCTTATCCTCTTCATCAACCATCGCTTGGTGGAATCTAGTGCCTTGAAGAAAGCAATCGAGACCGTCTACACCGCTTATCTTCCCAAAAACACTCATCCTTTTCTTTATCTTAGTTTAGAGATTGCCCCTCAGAATATTGACGTGAACGTTCACCCCACAAAGCACGAGGTGCACTTCCTGCACGAGGACAGCATCATCGAGAGCATTCAGAAACACACTGAGAGTAAACTGCTCGGCTCGAACTCCTCGCGCACATACTTCACACAGACTCTGCTTCCAGGACTTTCGGCGTCCACCAGCGCAACAAAAGCCTCTAGTTCTTCAGCAGATTCCCAGGAGCGTGTGTACGCCCATCAGATGGTCCGCACTGACAGCAAAGTCCAGAAGCTGGATGCGTTTCTCCAGCCATCAGCTTCTCAGAGCAGGCCAGATAAAGCCTCCAGCTCTTCCACTGCTCCTCAGGGTTCAGCCGAACCAGACGACTCTGAGCTGCTGACTGCTCTGGACGTTCTGGAGCCGTGTGAAGCAGAAGAtccacagacagacagtcaaCCTCCTCCTGAAGAAGCACCACCAAGGAAAAGGCCTCATGTTGAGGAAGTGAAGGAGGATTTGACGGCCGCCTCTCTGCCCAGGAGACGCACCATTAAACTGACCAGCATAAAGGAGCTCCGGGAAGATATTGAGAAGCAAGCTCACAAAGGTTTGCAGGATCTGCTCCAGAATCACTCATTTGTAGGATCAGTCAACCCTCAGTGGACTCTAGTGCAGCACCAGACCAAACTCTACCTGCTCAATTCAACCAAACTCAGtcaggAGCTGTTTTATCAAATTTTGATTTACGATTTTGGTAACTTTGGGGTTCTTCGATTGTCGAATTCAGCTCCGCTCTATGATTTGGCCATGTTGGCTCTTGATTCGGAGGAGAGTGGGTGGACGGAGGAGGATGGTCCAAAAGAAGGACTGGCACAGTACATCGTGGATTTTCTGAAGCAGAAAGCAGAAATGCTGGAAGAGTATTTTTCTCTAGAAATCGATGAAGAAGGGAACCTGACCGGTCTGCCAATGCTGCTTGATAATTACACTCCTGCTATGGAGGGTCTTCCCATGTTCATTCTGCGTTTAGCCACAGAGGTGAACTGGGATCAAGAGAAAGAATGTTTTCATGACTTCAGCATAGAATGCAGTAATTTCTATTCCGTAAGGAAACAATACACGCTGGAGCCGGATGCTGAAGAGCCACAGGACGCAGAAATGAGCTGGCAGTGGAAAGTGGAACATGTGCTTTTCAAAGCGCTCCGCACTCTCTTCAGTCCTCCAAAGCACTTCAGTGAAGACGGCAGCATTCTGCAGATAGCCAGCCTGCCTGAACTCTACAAAGTCTTTGAAAGATGCTAAGTTTTAGTACGTGTTGTGTAACGGTTTTAATGTTGTCCTGTCAAAAATGCTGCTTGCGTTAGCTGACCAACTTAAAATGACTGACAGTGATTAACAGCCTGTCACGTTATTTCTGGTGTCCAGCCAACATTAAACCAAGAacgtttagatatttgtactgcaaataaataaaaaaaagagactattttgaaatattaaa

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0016446 somatic hypermutation of immunoglobulin genes biological_process
GO:0043060 meiotic metaphase I plate congression biological_process
GO:0007283 spermatogenesis biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0051026 chiasma assembly biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0007141 male meiosis I biological_process
GO:0000795 synaptonemal complex cellular_component
GO:0032389 MutLalpha complex cellular_component
GO:0032390 MutLbeta complex cellular_component
GO:0005712 chiasma cellular_component
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0032407 MutSalpha complex binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K08734 MLH1; DNA mismatch repair protein MLH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139623 lncRNA upstream 6171 16557836 ~ 16558137 (+) True G94365
TU139619 lncRNA upstream 21370 16541185 ~ 16542938 (+) True G94361
TU139569 lncRNA upstream 45482 16516813 ~ 16518826 (+) False G94324
XR_006252311.1 lncRNA upstream 183232 16361672 ~ 16381076 (+) True LOC122356350
TU139677 lncRNA downstream 170674 16741467 ~ 16796842 (+) True G94397
TU139793 lncRNA downstream 315291 16886084 ~ 16925137 (+) True G94481
TU139800 lncRNA downstream 356121 16926914 ~ 16938654 (+) True G94484
TU139822 lncRNA downstream 451071 17021864 ~ 17030075 (+) True G94501
TU139823 lncRNA downstream 451071 17021864 ~ 17029600 (+) False G94501
XM_043255676.1 mRNA upstream 48604 16488877 ~ 16515704 (+) False cpeb3
XM_043255672.1 mRNA upstream 48604 16488895 ~ 16515704 (+) True cpeb3
XM_043255674.1 mRNA upstream 48604 16488895 ~ 16515704 (+) False cpeb3
XM_043255678.1 mRNA upstream 48604 16488896 ~ 16515704 (+) False cpeb3
XM_043255679.1 mRNA upstream 48604 16488896 ~ 16515704 (+) False cpeb3
XM_043256179.1 mRNA downstream 22507 16593300 ~ 16594640 (+) True mrpl14
XM_043255698.1 mRNA downstream 49489 16620282 ~ 16826870 (+) True cdh23
XM_043255699.1 mRNA downstream 49489 16620282 ~ 16826870 (+) False cdh23
XM_043254574.1 mRNA downstream 263497 16834290 ~ 16867531 (+) True smoc2
XM_043254575.1 mRNA downstream 263499 16834292 ~ 16867531 (+) False smoc2
TU139570 other upstream 45482 16515827 ~ 16518826 (+) True G94324
TU139572 other upstream 47549 16515827 ~ 16516759 (+) False G94324
TU139571 other upstream 47549 16515867 ~ 16516759 (+) False G94324
TU139427 other upstream 659959 15903946 ~ 15904349 (+) False nkx1.2la
TU139358 other upstream 686886 15873444 ~ 15877422 (+) True G94186
TU139637 other downstream 26988 16597781 ~ 16605383 (+) True G94378
TU139910 other downstream 989503 17560296 ~ 17575938 (+) False G94564
TU139911 other downstream 989503 17560296 ~ 17562248 (+) True G94564
TU140175 other downstream 1868380 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 1966099 18536892 ~ 18537443 (+) True G94789

Expression Profile