RNA id: XM_043256198.1


Basic Information

Item Value
RNA id XM_043256198.1
length 2823
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122357022
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12024402 ~ 12029159 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgagTAATTTTGTATGATtgttttaacacaattttaatgatactgaatacaaatgtataagcaaatgaaaacacagcCTTAAGTAAAACATCTGACAGTATTTaggttatattaataatgataacacTTCATTAGTTAAggttagttaacattagttaacaactataacattaactaataataaaaaaaaatcattcattctttaatattgtttaatgtcaattgcaacatttactaatgcagtAAATTAACAGTTGTGCTTGTTAATGCACTCTGAATGAACAAGAACTAAAAATTATCATTCACTAACATTGAGCCCGTATTTGAGCGGACTCTGCTTTTGAGCTTTGTTATTTGAGCGGACTTTGAGCGTTAGGCTACTATACGAGCAGATGCACGTTTATTCAGCGTAGCGTCAAACCGCGGAATGACACGGCGGGAGCGCCATATATTATATGgcatgtttttctctttcgCCATATATTATATGGCACGCATTCCTGTGTTTAATAGCTGTTCAGTACAACACCTGGATTTATTCAGAACTACAGTTTTAACCTAAACTGAACACTGCTCTCAGGACAacggtatttatttatttgatgtcacattttaaaGGGGCACATAGTTAGGCTATTGCTCGCTATAGTTAGCCTTCACATTATTTCTACATAATTAAAGCTCCAGATCAATGATCATGTaatatttagcttatttttagctttttttgtactatttaaatgtactggaaagaagaagaaaaaaaaaacatgcaaatctACAAGTCCGACACTTGCCCGGGACTGGTGACGTCACGTGGTGGTTGTGGTGGCTTTGATGCTGCTGAGAGAAATAGACCTACAGAACACAATTCTTCCTCCCTGCCACCGCAACAATATGAGCAAACCTGAAGGCACTGGGGGAGCTGGACAGTCCAACTCCGACAACAGCGAAGAAAGAGACTGGGCAGCTGTCAAAGCATTATTTGACAACGCGAAAACAACGAAGAAGCCCCGTCCGCCCAAACCCAGCAACGCCGTGACCATTGCGGTGTCCTCGCGAACGCTGTTTAACATGGTGAAGGAGAGGAAGGTGTTTGAAGAGGAGGGGCTGGAGAGGTACGTCGCGCACCAGCTGGAGCTCGAGGACCAGCCTTTCACCCCAGGGGTCTCGTTTCCTTTCGTGAAGgccctgatgaatgtaaATGCTCGTTTGAGAGAACTATACCCAGATGACGAGGAGCTGTTTGATATTGTGCTGATGACTAACAATCACGCCCAGGTCGGAGTTCGCCTCATCAACAGCATCAATTACTACGATCTAACTATAGAGAGATTTTGCATGACGGGTGGAGAGAGTCCAATTGGCTACCTAAAGGCCTACATGACTAACCTCTACTTGTCCAAAGATTCAAAGAAGGTACAAGAAGCTATTGAAgaagGAATAGCAGCTGCCACAATGTTCGCATGCGGCAGTGAAAATGAGCTCAGTGACACACAGTTACGTGTAGCATTCGATGGAGATGCGGTTTTGTTTTCAGACGAGTCTGAAATTATTGTTAAGGAACACGGATTGGACACATTCTTTAGGCATGAGAAAGAGTTTGAGAACAAGCCTCTTGCTCAGGGCCCCCTTAAAGGTTTCCTGGAAGCACTGGGTAAACTCCAGCGCAAGTTCTATGCAAAAAACCAACGAATCAGTTGCCCTATTCGCACTTACCTAGTCACAGCACGAAGTGCCGCCAGCGCTGGGGCCCGTGTTCTGAAGACCCTACGAAGCTGGGGGTTGGAGGTAGATGAGGCCCTCTTTTTGGCTGGGGCTCCAAAGGGGCCTCTCTTACAAAAGATCAGGCCTCACATCTTCTTTGATGATCAGATGTTCCACATAGAAGGTGCCCAGGAGCTGGGTACAATCGCTGCTCATGTGCCCTATGGGATTGGACAGAAGTATGATAAGGGGAAACGCATAGATACAAGTGatactgaaaaaaagtgaaaagattTGGTGATTATCCAATGCAACTGACCAATACTTTAGGTACCTCAACACCTATTCAGTGTCTTACATTTAATCTATACAACAGCTGAAtgtttactaatattaataatgagcAGGGACTTGGCAAGTTATAggtaactgtatttatttatttggttgcaTAAGAGAAAGTTCTGAACCTTGAACTATACATATAATGGATTATAAATTAATTGCtggaaatataaatacaaagaagCTACGGTGCTCAAAATGTTCTGGTATATCATGTACTGTACTAATGTGTCAGCACTGTGAGGTTAAACTATGTGCTGcatcactttctttttttaaggagAATAATGTGAAATTACATGGATTTATCCAATTTTATACCTTGTTCATTCTGATTTTTAAGGTGTTTCTTCAAGTTTAATTGAGAATATTTAATTCTATCTCAGGGAAACATATACTGCAACTGTCTGTATTTTATTAAGTCTTATTATTCAAAGATTAATTTTGCAAATTTTATctacattttgatgttttgaactttttttactGCTGTACTTATATATTCAGACTCAATCATCAGCCAGTTTAATTCACTGACCTATGTTTGTTCACCACCAGTGTTTCTGACAGACCTTGccacaataataaaatgctgaaataagaGTAAGACTGTGAAGAaacatatatattgtaattagaATGTGTTACCCCTGTGTGTTTACCATAAggtatatattcattttatttagttctgtccacaaaaccaaaatatgttgTTGACTGTCAAACACTGGATTTATTTGtgctgaaaaattaaatgtgtgatCATA

Function

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137801 lncRNA upstream 217156 11807028 ~ 11807246 (+) True G93113
TU137672 lncRNA upstream 265793 11751939 ~ 11758609 (+) True G93006
TU137667 lncRNA upstream 295918 11727823 ~ 11728484 (+) True G93001
TU137645 lncRNA upstream 395836 11628359 ~ 11628566 (+) True G92984
TU137632 lncRNA upstream 420243 11603697 ~ 11604159 (+) False G92977
TU137844 lncRNA downstream 48478 12077637 ~ 12079902 (+) True G93153
TU137864 lncRNA downstream 69535 12098694 ~ 12099226 (+) True G93166
TU137865 lncRNA downstream 70447 12099606 ~ 12100355 (+) True G93167
TU137867 lncRNA downstream 75574 12104733 ~ 12107484 (+) True G93169
TU137897 lncRNA downstream 92780 12121939 ~ 12178466 (+) True G93182
XM_043256201.1 mRNA upstream 111 12022560 ~ 12024291 (+) True LOC122357024
XM_043254599.1 mRNA upstream 142525 11875804 ~ 11881877 (+) True osr1
XM_043256273.1 mRNA upstream 300042 11712438 ~ 11724360 (+) False hif1aa
XM_043256274.1 mRNA upstream 300042 11713580 ~ 11724360 (+) True hif1aa
XM_043256083.1 mRNA upstream 315694 11693923 ~ 11708708 (+) True prkcha
XM_043256199.1 mRNA downstream 292 12029451 ~ 12031896 (+) True rdh14a
XM_043255552.1 mRNA downstream 72814 12101973 ~ 12104666 (+) True mtres1
XM_043256336.1 mRNA downstream 115479 12144638 ~ 12172343 (+) False sobpa
XM_043256338.1 mRNA downstream 115479 12144638 ~ 12172343 (+) False sobpa
XM_043256334.1 mRNA downstream 115480 12144639 ~ 12172343 (+) True sobpa
TU137630 other upstream 419550 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 420178 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 446543 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 806227 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 809315 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 542472 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 557727 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 1187499 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1710448 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 2324957 14354116 ~ 14367135 (+) False frmd6

Expression Profile