RNA id: XM_043256217.1


Basic Information

Item Value
RNA id XM_043256217.1
length 2879
RNA type mRNA
GC content 0.47
exon number 13
gene id golga5
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12373606 ~ 12379217 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCCTGGTCCACGTCGGTCTGGATCAGGATGAGTACCAGGATAAAAACAGTCACCGATAAGCGATCAAGGGATCAGTAGACACAATTTGCCCTGATATCCTCCAAAACATGCACATGCAAGATTTATTTGCCGCTTTCTGAGATATCGAGAGCCCCTTCAGAAGACCTCAAGATGTCTTGGTTTGTTGATCTTGCTGGGAAGGCAGAGGACTTCCTAAATAAAGTGGACCAGGGTGCAGCCAGTGCTTTGACAAAAAGCACTCACAAGTCCTCCCTGTCCTACAACAGCCCTGACACCACAGATTCGATTCAGTACAGCTCCACTGAACTGCATGGGGACTCCATCTCCTCCTCATCCCATGAAACTTCAGCTTTCATCTCCGCAGCTGCTGGGAACATAAAGAAATCTAAAGCCACAGTTTTGGCCGCTACAGCTAATGTTTCCAGCACCATGTCTTTGGGTTCTAGCAGCAAGGCATCATCCAACTTTGTGcgacccaaaaagccagaagtaAATGATGATTTGCTATTTGACTTCTTGAATAGTTCAGACCCACCGCAGAGTGAAAGAAGGGAGGTCAGAAGAGAAACAGTGTCTAAGGTTTTGGGTCCAGCAGGGGGGTCAGTTCAGACCCAGATGCCCCCTATTTCTGTGGCTGGTGACCTGCAGGTTGGTCCCTCTGTTACTGCAACCCCATCATCAACACAGGGCCTTTCTAGAAATTCCAGCCTCAGCTCTCTTTCAAACAGCTCACACAGCGTTAAAACTGAGGATGGCTCCAAAGACCAAAGCCAAGCTGATGTTCATGAGGGTTTGAATCCAGGGCTGGATGTTCCCGCAGAGGCCCAGCCAGCACTGGAGATCCCATCTCAAGAGcttcagcagcagcaacagGGCCAAGAGCAGGTGATCTCCAACCTTCGTCTCGAGAACCAGCTTTTACGCAATGAAGTCTCTTCTCTCAACCAGGAAATGGCCTCTCTAATCCAGAGAGCCAAAAACATGCAGGAGGAGGTAAACGTTTCCAGGGCTCGTGCTGAAAAGTGGAACTCTGACCAGTCTCGTGTTGACCGCACGGTTCGAGAGCTAAGGGCCCAGGTTGATGACCTCACAGAAACCCTGTCTGCAAAAGATGGACAGCTGGCAGTCCTTAAAGTACGACTGGATGAGGCAGATCAGCTACTGAAGTCCCGAAGCTCTGCCCTGGAGGAAGCACAGAACGAAAGGGTCAGgATTCTTCAGGATCACAGTGAGGGAAGCAGTCTTCAGTCTCAGGCTTTGCAGACATTACAGGACAGAGTAAGAGACGCAGAAGCAGCAGTGAAGAGAGAACAGGAGAGCTACAGACAGATGCAGaGTGAGTTTGCAACACGACTGGCAAAGTTAGAGTCCGAGCGTCAGCAATTAGCGGAGTCATTAACAAATTCAGAGCGCCGAGTGACAGAAGAGAAACAAAGAGCTGAGGAACTACTTCAGCAAGTCAAGAGCGCCCGATCCGCAGCAGAGTACACCAAACAAGAGTTACAAGACTACAAAAACAAAGCCTCACGCATATTACAGTCTAAGGAGAAGCTGATCAGCAGTCTGAAGGAAGGCTCGGGTCTAGAGGTGCTGGAGGGAGCTGGGGCTGGAGTCGAACTCGAAGAGCTCCGTCATGAAAAAGAGCTGCAGAGAGAGGAGATTCAAAAGCTACAGGCCCAAATACAGAGCTTACGAACAGAGATACAGGATCTGGAAACACAGGCACTCACAGAGAATGAAAACTGGAGAGAACAGGTGGCAGAAGTACAGGAACAACATGGCCAGCAGATCAGAGCCAAACAGGAAATAGAAGCAGAACTGGAAAGATCTAAACAGGAACTTCAGTACATTGAGGAAGAGCATCATCGCACTAAAATCACCCTTCAGGGTCGCATCAAAGACAGAGAAGATGAGATCCAGAAGCTTAGAAACCAGCTGACCAACAAGGCTCTGAGCAACAGCAGTCAGGCAGAGCTGGAGGGCCGTTTGCACCAGCTGACAGAGACACTGATTCAGAAGCAGACCATGTTAGAGGCCCTTGGCACAGAGAAGAActctctggtctttcagctggaGAGGCTGGAACAGCAGCTGAAGAGTCTGCAGGGTGGTCAGAACAGCGGCTCACACATTAACATGGCTGCCATAGAAGGACCAGgTGCTAGGCAGAGGAACACACCAATCTTGTTTAATGATGCAGACGGACCAGGTACAGGAGTGTATGGGAAGGTTCGTAAGGCAGCCAGCACCATCGACCGCTTCAGTATACGTCTAGGAATCTTTCTCAGACGTTACCCTATGGCCAgggtttttgttattatttatatgGCACTACTACACCTTTGGGTAATGATTGTCCTTTTGACATACACACCAGAGATGCATCACAATCATCCTGATGGGAGATAAAGGCATTCTACCTGTAACAACACATAATAACCTGTTTGAGATTAGTAAGGGTTAATAAAGGTTAAGCTTAGGGAAATTTCAGGCTGCTGTACAGTGGcttattatgcattcattttcaatttgCACAGACATGCTGTTGGGCagttcttttttctctctctctgttactCTGTTTCTCTGACATTTCCCCTTGttcagcttttcttttttttgcccgTATGTGATTGAATGCTTTCAGTGAAATTTGGCATGAGTGTTAAGAACAgtataaagtgaaatatttaaggTGTAATTTAAAGGTGTGGTTTTATCAAAATGAGaatcttttgtcttttattcATCTTTCACGCAAATGTAATCATGACTATTTTTGTTACAGGAAATAACAGATTGTATTCCTCACACTGTAAAGCAGATTTctcttaataaatattaacacggacataa

Function

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0007030 Golgi organization biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138098 lncRNA downstream 88552 12278454 ~ 12285054 (-) True vti1b
TU138100 lncRNA downstream 88552 12278567 ~ 12285054 (-) False vti1b
TU138102 lncRNA downstream 88552 12278567 ~ 12285054 (-) False vti1b
XR_006252425.1 lncRNA downstream 193387 12151847 ~ 12180219 (-) False LOC122357111
XR_006252392.1 lncRNA upstream 22454 12401671 ~ 12406892 (-) False LOC122356854
TU138139 lncRNA upstream 22461 12401678 ~ 12406933 (-) True LOC122356854
TU138169 lncRNA upstream 50005 12429222 ~ 12430686 (-) False tmem234
TU138170 lncRNA upstream 50005 12429222 ~ 12430686 (-) True tmem234
TU138211 lncRNA upstream 152764 12531981 ~ 12533886 (-) True G93392
XM_043256402.1 mRNA downstream 615 12354697 ~ 12372991 (-) True trip11
XM_043256403.1 mRNA downstream 22080 12341913 ~ 12351526 (-) True fbln5
XM_043256404.1 mRNA downstream 31830 12333170 ~ 12341776 (-) True LOC122357133
XM_043254531.1 mRNA downstream 42272 12327780 ~ 12331334 (-) True plek2
XM_043254981.1 mRNA downstream 50905 12298229 ~ 12322701 (-) True zfyve26
XM_043255916.1 mRNA upstream 480 12379697 ~ 12391749 (-) True rtf1
XM_043255917.1 mRNA upstream 16564 12395781 ~ 12399528 (-) True nusap1
XM_043254688.1 mRNA upstream 49980 12429197 ~ 12430778 (-) False tmem234
XM_043254541.1 mRNA upstream 61822 12441039 ~ 12444878 (-) True LOC122356084
XM_043255846.1 mRNA upstream 78654 12457871 ~ 12461979 (-) False btbd6a
XR_006252352.1 other downstream 574574 11771428 ~ 11799032 (-) False utp25
XR_006252349.1 other downstream 842297 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252282.1 other downstream 1154621 11200946 ~ 11218985 (-) False rassf4a
TU137394 other downstream 1438275 10924944 ~ 10935331 (-) True G92819
TU136940 other downstream 2183096 10185761 ~ 10190510 (-) False LOC122356841
XR_006252291.1 other upstream 49980 12429197 ~ 12430778 (-) False tmem234
TU138208 other upstream 177860 12557077 ~ 12597302 (-) True LOC122356414
TU138426 other upstream 1185205 13564422 ~ 13567925 (-) False srd5a2b
TU138887 other upstream 1316855 13696072 ~ 13696792 (-) False map3k4
TU138915 other upstream 1531122 13910339 ~ 13911837 (-) True G93875

Expression Profile