RNA id: XM_043256229.1


Basic Information

Item Value
RNA id XM_043256229.1
length 3513
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC122357047
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5936401 ~ 5946902 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAACTTGCCACACTGCAGCTAAAGGATCACCTCCCGGCGTAGGCATTTTGACAACCGCGTGGCGGTGACCTTATAGAGATCAGAGCAGTTTTTTGAACTGTGTTGAAACTTAACTCCTGCTTTAACCTCTGTGCTTCCCACAGGCTGCCCTGCATGAGCGTGTGCGGGTCTGCATATGTCCACACGTTAGGGAATCCAGACacagctgttttctctctttggAGGCAAAAGAAAGAGTAAGgataaaaagtgtgtgtgtgtgtttgtgtatgtcaCAGGGAGAGAGTGTTCTGACTTTCTGAACTTTGAGTGTTTGTACACATTCTGACTCTCGGAGTTCGTCGGCTCACCATGGAAAGCCTAGAGtttgaaaagaggaaaaagcgGTACCTTATCCGAGGCAAGCATGCTGCCATCATCTGCGCCGTCTTCATTGTGACAGGTGTTGCTGTGGGGCTCGGAGTTGGTTTGAGCCAGAAGACCTCCTCTTCCGAAGAGGAGCCCAAACCAACACCATTACCCACAACACCATTACCTACAACGACGCCAGATGACCGGGGCCCTTGTAAACCGTCCGACAACACAAATGGAGACTGGAAAAACTTCCGCTTACCTGCCTACGTGGTACCTTTCCATTATGACCTGCACCTGGAGCCCGACCTCGACACAGACATCTACACCGGGAGCGTGTCCATCCATCTGACCCTGGCTCAGCCCAGTCAGCACCTGTGGCTCCACATCCGAGAGACGTTTGTCACCGCCGTGCTCCTGAAGCGCAGCCTGCCGTCCGGCTTGACCGATGTCCAGGTGAAGGAATGCTTCGAGTACAAGCCGCAGGAGTATGTGGTGGTGGAGGCAGCCGAGCAGCTGAGCGCCACTGGCCCAGACGAGCACTATGTCCTCACTCTACACTTCCAGGGCTGGCTCAACGGCTCTCTGGTCGGTTTCTACAGGACCACGTATCAGCAGAATGAAGTCACCAAGAAAATCGCTGCAACAGACCATGAACCCACAGATGCTCGTAAATCTTTTCCCTGTTTTGATGAGCCCAACAAAAAGGCCACCTACACGATCTCCATCACCCATGACAGTGCTTATGAAGCGCTGTCCAACATGCCTGTAGAGAGCATAGAAAAAGTGTCGGatcaaaagataaaaacatcCTTTAAAAAGTCAGTAAGGATGAGTACCTATCTGGTATGTTTTGCGGTTCACCAGTTCCACTATGTGGAGCGGACCTCGAAAAGAAATGTACCACTGCGGATCTATGCTCAGCCTTTGCAGATCTCAACCGCTGAATATGCTGCAAATGTCACCAAGATTATATTTGATTACTTTGAGGAGTATTTTGACATGGAATATTCCATAGAGAAACTTGATAAGATAGCGATCCCAGACTTTGGGACAGGAGCGATGGAGAACTGGGGCTTGATCACTTACAGAGAAACCAACCTGCTGTTCGATGAGAACGAATCCTCCTCGGTCAACAAGCAGCGAGTGGCCAGTGTCATTGCGCACGAGCTTGTTCACCAGTGGTTTGGAAATATTGTGACTATGGACTGGTGGGACGACCTGTGGTTGAACGAGGGCTTTGCCAGCTTTTTTGAGTATGTGGGAGTGGAAGAAGCTGAGCCTGACTGGGGAATGCGGGACGTCATGCTTATCAATGATGTATTTCCTGTCATGGTTGATGACGCTCTTCTCTCGTCTCATCCTATTATCGTGGATGTGTCCAGTCCTGCTGAGATCACATCTGTGTTTGATGCAATCTCATATAACAAGGGTGCTTCTATTTTACGAATGCTGGAGGATTTGCTTGGCCGTGAAACATTTAGGGATGGATGTCGACGATATTTAAAAAGGTACCCATTCCAGAATGCAAAGACTGCAGACTTTTGGCAAGCCTTGGCTGATGAGAGCGGGGTAGCTGTGGCAGACATCATGGACACATGGACCAAGCAGATGGGTTATCCTGTGCTGACTCTGACCAACACAGACACTGAAGCTAAACTCACCCAGACCAGGTTTCTTCTGGACCCCAATGCTGACCCCAGCCAGCCCAGCACTCCATTGGGCTACAAATGGACCATTCCTGTGAAATGGAGAACACTTGACTCCAAAAACGCCTCTTTCCAGTTTGACAAGGGAGAAACAGAGGCAGTAATTGTAGGATACTCTCCTGCTACCGATGGTCTCATCAAAGTCAACAAAGACCACATGGGCTTTTACCGAGTAAATCATTATGAACATGTGTGGAGCGCTATTGCTGAGCAACTGTCTCTAAATCATCAGGTGTATGATGCAACTGACCGAAGCAGCTACATTGATGATGTATTTGCATTTGGACGCGCAGATATTGTCAACTATGGGCATGCCTTCAACTTAACTAGATATCTGGCCAATGAAACCGAGTATATCGTGTGGGATAGAGTATCTACTTCTGTCTCCTATGTGAGAGAGATGCTGGCTGATGATACAGTGCTGTACCCCAAATTTCAGAAACTCTTCCGTGACCATGTGCAGAAGATATCCAAAGAGCTTGGGTGGAATGATGAGGGGACGCAAACAGAGCGGCTGCTGAGAGAGACAGTTTTGGGCCTTGCATGTCAGATGGGCGACCAGGAGGCTCTCGACCAAGCCTTTGACGTTTTCAGTAAATGGATTGACGGAACAATTAGCAGTGTGCCTGTCAATCTACGGTTGCTGGTGTACCGATACGGCATGAAGAAGTCAGGATCAGTCCACAGCTGGGAAATCATGTTCCGCAAGTATATCTCTgccactcttgctcaggagaaAGACAAGCTGCTCTACGGCCTGGCTTCTGTAGAAGATATCACTCTTCTTCATAGGTTGCTTGAAGCTgctaaaaatgaaagcattgtGAGGAGTCAAGATGTTTTTACTTTAGTGCAGTATGTATCTCGAAACCCATATGGCAAAACCATGGCCTGGGAGTGGGTCACGCTCAACTGGGATTACCTAGTGAACAGATATACCATTAATGACAGAAACTTGGGCCGCCTGCCCTCCAGAATAACTAGTTCATACAACACCGATATGCAGCTTTGGAAGATGGAGCACTTTTTTGCACTTCATCCGAATGCAGGAGCAGGTGAGATGCCCAGAAAGCAGGCAGTAGAGACTGTGAAGAACAATATTGAATGGATGAAACGGAACCTGGATGAGATCCGGTTCTGGCTGGATAACAACACGGTGCTGGAGAACTAGTGTTGTAATGGGCAGGCATCAGAACTATTTTTCCACCGCTGACTAAATTTGTTTTCACAAGTCAATGAAGTGCTCAGggcagtttgaaaaaaaatgtttttggttaaGAGCCACAATTAAAAACACTCTATAAAAAGATTCTTTTAGCATGACAGCTGAATAAACGTATATTTTCCTTGGAGCtaggcattattttatttaatgtgttcattacacaatatattaattatttgtaaaatgtgtaaatgtgaaataaatgttataaagaATGCTTACATTC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11141 ENPEP, CD249; glutamyl aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135046 lncRNA upstream 8268 5927834 ~ 5928133 (+) True G91180
TU135045 lncRNA upstream 9653 5926358 ~ 5926748 (+) True G91179
TU135044 lncRNA upstream 10076 5924540 ~ 5926325 (+) True G91178
TU135040 lncRNA upstream 59662 5873007 ~ 5876739 (+) True G91174
TU134973 lncRNA upstream 166883 5769290 ~ 5769518 (+) True G91127
TU135032 lncRNA downstream 4328 5951230 ~ 5952517 (+) True lamtor3
TU135036 lncRNA downstream 7989 5954891 ~ 5956598 (+) True G91172
TU135142 lncRNA downstream 38642 5985544 ~ 5986979 (+) False commd8
TU135152 lncRNA downstream 51540 5998442 ~ 6002062 (+) True G91250
TU135249 lncRNA downstream 307701 6254603 ~ 6261915 (+) True akt3a
XM_043254815.1 mRNA upstream 817 5930197 ~ 5935584 (+) True lrit3b
XM_043256158.1 mRNA upstream 128525 5795240 ~ 5807876 (+) True nsd2
XM_043256160.1 mRNA upstream 128525 5795240 ~ 5807876 (+) False nsd2
XM_043256162.1 mRNA upstream 128525 5795240 ~ 5807876 (+) False nsd2
XM_043256161.1 mRNA upstream 128525 5795240 ~ 5807876 (+) False nsd2
XM_043256152.1 mRNA downstream 4315 5951217 ~ 5952419 (+) False lamtor3
XM_043254562.1 mRNA downstream 35616 5982518 ~ 5985958 (+) True commd8
XM_043255826.1 mRNA downstream 131315 6078217 ~ 6087501 (+) True pprc1
XM_043255828.1 mRNA downstream 131488 6078390 ~ 6087501 (+) False pprc1
XM_043255888.1 mRNA downstream 142050 6088952 ~ 6101193 (+) True oga
TU134595 other upstream 938505 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 1692360 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 1692360 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 1692360 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 1864502 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 1184524 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1889288 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1911796 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 2359584 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 2719366 8666268 ~ 8683052 (+) False pcnx2

Expression Profile