RNA id: XM_043256231.1


Basic Information

Item Value
RNA id XM_043256231.1
length 1846
RNA type mRNA
GC content 0.61
exon number 12
gene id b3galnt2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20245487 ~ 20264253 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGCAGTTTAGACATGACGCAGCGCGTCGGGAGCCCGTCACATCAGCGATGCGCGTCGCGGCGAGTCGCCGGTCCGGTCGTTGTGTGCGCAGCCCGTTAAGCGTCGGTGTCCGGACCCAGCCGTTCGTCCATGAGAAGCGCGGCGGCGGCGCTGTTTCCGTGTGTCTTCGCGGCGCTGCTTCACTGGCTCGGCTGGACCGACAGAACCGCGCTCCTGCTGGGCTTCGGCTCTGCAGACAACCAGAAGGCTGTGCGCGAGGTGCTGGTGGGCGTCCTGTCAGCGAGGCATCATCACGAGCTCCGGCAGGCCATAAGAGACACGTGGCTGGGGTACCTCAAACAGCACCCGCACTTCCAGAAACGGGTGATGGTGAAGTTCATCATCGGCGAGCGAGGCTGTTCGGTGCCGGAGGAGGACCGCGAGGACCCGTATTCCTGCTCGCTGCTGAACCTCACGGAGACGGCTGCTGGACAGGAGATGGCTATACTGAGCGTTCCTGACACGTCCGCTCTGCTGCCGTCCGACGTCTCTGCCGTCAGTCTGGACTTCAAGGTCCTTCACTCGGTGGTCATCACCCAGCTGGGCGTCTTTCCCAACGCGCCGCAAGACCACTTCAGAGGCAACGTCACCGTCCGGCTCTTCCAGGTGGACCAAGAGgagCCGGTGGTCACCGCTCGCTTCAGCGCACTGAGTCCAGGCACACGTGTGGGTGGGATGTTTTACAAACCCGTCGAGCAGTTCATTCTTCCCAAGGGTTTTGAGGGGACTCTTCTGTGGGAGGCCCAGGATTCGTCGGGCCTGATGTCGGTCGACACGTCGGCGGTGCAGCTGAGTCACGGAGGAGGCGTGCTCAAGTTCGGATCTATAGAGGAGGGAACGCTGCCTCACAGGAGCGCTTTGGGCTTCCCAGGCTTAGCCGGAGGATTCACTTTTTCAGTCTACGatggtCAGGTGTTATCGGAGCTTCTCCGCGGTCGAGCCGGTCGTCAGCGTATCCGTGAGTCTCAGCTGAGAGAGGAGGACCAGGCCCTGCGGGAGGAGAACCTCAGACATGGAGACATGGTGTTTGTGGACGTGGTGGACACTTACAGGAACGTGCCTTTAAAGCTGCTGCAGTTTTACAAATGGTCGGTGGGAAACGCTGACTTCAAGCTGCTGCTGAAGACGGATGACGACTGCTATATCGACGTGGATGCTGTCCTGCTGAAGACGGAGCGCAGACGCCTCTCACAGAGCAGCCTGTGGTGGGGAAATTTCCGTCAGAACTGGGCCGTGGATCGCGTGGGGAAATGGCAGGAGCTGGAGTACGCGAGCCCAGCCTATCCGGCCTTCGCCTGTGGCTCTGGGTATGTGGTGTCCAGGGATCTGGTGGAGTGGCTGGCCAGCAACGCTCAACATCTCAAAGCCTACCAGgGAGAGGACGTGAGCATGGGCATCTGGATGGCTGCCGTCGGGCCTCGCAAATATCAGGATTCAGGCTGGCTGTGTGAGAAGGAGTGTTTCGTGGACATGCTGTCGTCTCCTCAGCACTCTCCTCAGGAGCTGCGCTCGCTCTgggacaggaagaggaagtgctCCGATCCCTGCGGCTGTGCCTGGGCCGGCCCCTGACCCCGTCTTCAGTACGACACACTCGTCATGTCGTCCACCGGCGGATGTCAGACGCACACGGGGTTTGAGGAGCGCCGGCGCCGCTTCACCCGTCCTTCCTCTCGTTCGCTGTCTTTCAGATCCTGAAATGGCGAAGCACCCGCCAAACCCCTTCCGGCGCTTTTACCTTAGCTGCAAGCCAAAACCGTTACACCGAGGCGGTGGTTTatgaacaataaaacattacaacagGA

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0006493 protein O-linked glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K09654 B3GALNT2; beta-1,3-N-acetylgalactosaminyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141230 lncRNA downstream 7260 20236678 ~ 20238227 (-) True G95506
XR_006252294.1 lncRNA downstream 104529 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA downstream 104801 20114726 ~ 20140686 (-) False LOC122356209
TU141188 lncRNA downstream 169550 20075371 ~ 20075937 (-) True G95469
TU141149 lncRNA downstream 323847 19921002 ~ 19921640 (-) False LOC122357123
TU141232 lncRNA upstream 476 20264726 ~ 20275256 (-) False LOC122356211
TU141247 lncRNA upstream 250523 20514773 ~ 20515311 (-) True G95519
TU141256 lncRNA upstream 254350 20518600 ~ 20520093 (-) True G95524
TU141285 lncRNA upstream 355797 20620047 ~ 20620719 (-) True G95537
TU141279 lncRNA upstream 357012 20621262 ~ 20623143 (-) True G95535
XM_043255557.1 mRNA downstream 26587 20150458 ~ 20218900 (-) True arid4b
XM_043255630.1 mRNA downstream 100019 20142549 ~ 20145468 (-) True tomm20a
XM_043255693.1 mRNA downstream 141615 20101059 ~ 20103872 (-) True irf2bp2a
XM_043255839.1 mRNA downstream 209014 20028487 ~ 20036473 (-) False LOC122356780
XM_043254718.1 mRNA upstream 535 20264785 ~ 20275386 (-) False LOC122356211
XM_043254719.1 mRNA upstream 535 20264785 ~ 20275031 (-) True LOC122356211
XM_043254720.1 mRNA upstream 535 20264785 ~ 20274689 (-) False LOC122356211
XM_043254721.1 mRNA upstream 11527 20275777 ~ 20345682 (-) True lyst
XM_043256235.1 mRNA upstream 82897 20347147 ~ 20502648 (-) True nid1a
XR_006252430.1 other downstream 101760 20143596 ~ 20143727 (-) True LOC122357145
XR_006252356.1 other downstream 338425 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1572594 18545581 ~ 18672893 (-) True LOC122356088
TU141250 other upstream 215675 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 217193 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 224535 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 229392 20493642 ~ 20496864 (-) True G95511
TU141260 other upstream 305788 20570038 ~ 20571562 (-) True G95526

Expression Profile