RNA id: XM_043256236.1


Basic Information

Item Value
RNA id XM_043256236.1
length 2114
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122357054
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9405901 ~ 9409531 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCGACCTCGTGTGGGTACATTTATCATCCGCCTAGTAGTCACTAGCAGCTGCGTTCTCCaaaagaaagggaaagaaatatcaaataggagCGAAAACGGCCCCATCGGTCACTTCCTGGATGTGAGAGCAGATGAGGAAACAGAGTAACGGTACCGCAGCGCTTTCTCTTGTGTCGGTTCAGTAGGCCATCGTTCTCAAACAATGAACAACGCTGGATAACTCTTAACTCTTGGATTACAGTACACACAGTGAAGGATGCAAGGTGCTTTCGCACGGGTTTGCATGGTGGTAGTAGCCGCTATCCTCAACCACCCGCTGCTCTTTCCTAACGAGAACACCACCATCCCTGAGCAAGATGACGAGCTCCTGACCCGGATGAAGGAGCACCAAGAGAAGCTGGAGGCCGAGCAGAAGCGCCTGGAACAGGAGATCTCACAAACAGAAACAGCCCAGACGGATGATCGGGACAGTTACAGCTGGTACTTTTGGAGCACTCTCTGCCTAGTCATTTTCTTCACCATCGAGGTGTGCAGGCAGGATATCATCCCTACGGAAATGCCAGACTCCGCGGAAGATGAAGATGGAGATTCCAGTGTCGAATATCTCAGCGCTAAGACTGTAGCCCTAGATAAATGTGTTCTAAGCAACTTCTGCAAGACCCGCTTCCATCCTTTCATCCACGAGAGTGGGAGAGTGCGAGAGTTTATCGAGGGCTTTGCAGATGATCTTCTCGAGGCTTTGAGAAGTGTTTGCGATCGAGATTCTGACCTGGAGGTCGAGGAATTTGTTGGTATAGGGAGCATGTTTGAGTCCTGGAGCGTGTCTAAACCTCCCACATGTGACCTCATTGTGCCTTTTGCTCCTCCACGGCCGTTCAGCTTCCAGTTTCAGCTCTGGTGTGACCCCTCCACTGAAATTCCACTCGACATGCAAGGATGTGGAAGGATTAAACTGATAAAACCAGGTGGAAGTGGCACAGACTGTCTTTGTGGCTCAGCCAATCTCGGTGATGATATGCTGTGTCTGCTTCACAATAGACATGAGAGCGAAAAGCTTGAGGAACACACACTGGTGGAGCTCCTCTGTGAGAAGAACACCTCGTTTTTGTTGAAAGATCAGATCATGAGATGGTTCCAGATCTCGGTGAGCAAAGCGTGGGGACAGATCTCCCATAAGTACGATTTTGAGCTGGCATTTCGGAACCTGGACTTCCCTGGAGCTCTGAAAATCAGATTTAGGTCTGGAAAGACCATCATTCTTAACATCACCCCTGCCGTACAGTTTGAGGACACGGATGCTTTCCTCATCTCTCACTTCCCATCTGACACTAGTAACTCTTCAGACATTCACTGGCAACTCTCACTAACTGTTTATGAGAAGAACCTGCTTAAACATCTAGCAAAACGACTTCCTGCAAATTCGTGTCATGTTCACTGTCTTCAGATAGTTTGTTTCTTGCACAAAAAGCAGACGGCTTTGACTGGGAGAAGCGCCCTTTCCGATTACCATATAAAGACGGCGCTTTTGCATCTGCTGTTGAGTAAACGTGCTGCGATGTGGCAGCCGCAGAATCTCGATCACAGATTACGAGATCTGCTCAGCTTTCTGCAGCAAAGCCTGGAGGAAAAGAGACTATATCATGTTGTTGTTGGGAACCCTCGCATCCCAGTGGAAATTCTGGTTCCCAAAATAATCCGTACTGCAGAACCGATAAACCTGTTTAGGTCTCTTGTATTACAGAGGCACATATATGCCAAAATGGAGGAGCATTTTCAGGAGATGGTCAAAAATACCTCCGTGCTTGTTCAGGAATACACCCCACACTTTTCTAATGGTTACGTGAGACATGAATTTAGCTCGACAGACCAGACATAGACTTACTCACTGCTCTGGCTGTGAGTGCAGGGGAATTTTACAGCCTAATTGCATAATGACGTCATGCACTTCAAATGTAAGCAACATGTTAAGCATTGACTGTTTGTGGTGCTATGAGGATATTTGGGTGTTTCTTTAACTTTGGGCATATATGTTCCAGGGGCCAAATTTCaagttttacatatttgttaGATGTAGGTGATGTTAAATCagtcttttttaaacatttagttgta

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136626 lncRNA downstream 241 9398804 ~ 9405660 (-) False G92295
TU136624 lncRNA downstream 241 9401775 ~ 9405660 (-) True G92295
TU136625 lncRNA downstream 5476 9398804 ~ 9400425 (-) False G92295
TU136617 lncRNA downstream 64831 9340345 ~ 9341070 (-) True G92289
TU136589 lncRNA downstream 271416 9134152 ~ 9134485 (-) True G92277
TU136647 lncRNA upstream 40865 9450396 ~ 9450688 (-) True G92314
TU136713 lncRNA upstream 41692 9451223 ~ 9454307 (-) True G92367
TU136755 lncRNA upstream 185495 9595026 ~ 9595280 (-) True G92391
TU136780 lncRNA upstream 230938 9640469 ~ 9641201 (-) True G92407
XR_006252386.1 lncRNA upstream 289482 9699013 ~ 10050383 (-) False LOC122356802
XM_043254676.1 mRNA downstream 19182 9382396 ~ 9386719 (-) True plaua
XM_043255022.1 mRNA downstream 28452 9342453 ~ 9377449 (-) False vcla
XM_043255020.1 mRNA downstream 28452 9342453 ~ 9377449 (-) False vcla
XM_043255019.1 mRNA downstream 28452 9342453 ~ 9377449 (-) True vcla
XM_043255021.1 mRNA downstream 28453 9342453 ~ 9377448 (-) False vcla
XM_043254630.1 mRNA upstream 34255 9443786 ~ 9450349 (-) False tial1
XM_043254629.1 mRNA upstream 34255 9443786 ~ 9450348 (-) False tial1
XM_043254632.1 mRNA upstream 34255 9443786 ~ 9448944 (-) False tial1
XM_043254634.1 mRNA upstream 34255 9443786 ~ 9448728 (-) False tial1
XM_043254633.1 mRNA upstream 34255 9443786 ~ 9448728 (-) True tial1
TU136576 other downstream 290350 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 1358000 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 2270759 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 2274686 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 3015186 6358201 ~ 6390715 (-) False sdccag8
TU136940 other upstream 776230 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 1515413 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 1791415 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 2116649 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 2361897 11771428 ~ 11799032 (-) False utp25

Expression Profile