RNA id: XM_043256248.1


Basic Information

Item Value
RNA id XM_043256248.1
length 3203
RNA type mRNA
GC content 0.47
exon number 4
gene id dact2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16894884 ~ 16900363 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCCTAAACGCGATAGTTGATTCACATTGGGACGCACGCCGAACGAGCTCAGTCACGTAGCGGATCTCGTCGTTTCCTCGCCACTCTGGAAATGTCTAAACAGCACGTCTGATAATGTTGGGAAGAAAAACACCTGGGTCAGGTATGCTGAGCGCGGCTGCAGGAATGGACCGGGGGAGGACAGGAGAGAGGCTGCACGCAGCGCTGGCTGGCCTGCAGGAGCTGCATTTCCTCCGGGACAAACAGAGTGCCATGGTGCACTGGGCTCTGACCCTGAACGGAGAGGTGCCCGAGACATCAAAACACGAGACTGTGAGCACAGAGGAGCTGAGACTGGAGGCAACGCTTACTTTACTCAAACAACAGCTGACACGTCTGCGCAAACAGGATGTGGGATTAAAGACTCATCTCCAGCAGCTAGATCAACAGATCAATGACCTAAAACTGGATGTGTGTAAAGCATCCACTGAACATCTAGAGAGTGACAGCAGACCCAGTTCAGGGTTTTACGAGCTCAGTGATGTTGGTTCAGGCTCGTTGTCCAATTCTTGCACCTCCGTCTACAGTGAGAgtctttcctcctcctctcaaACCAGTCTGCTTCCTCATCTCCCCACCTCATATGCGCCACATGGCCGTAATGGTTCTAGTCAGACTGGTGTGTCCCGTCGTTGTTCTGCTGATGAGAGCACCGCCCACTCCGATGCACCACGATCAGGAGTGAAGCTCGGTAGCAGCTGTTTACGAACAACAACGTCTCGAGTTGAAAGAGCAAGACAAAGACCTGTTTCTACAGGGGACCTTGACCGAATGCTTGCACCTGGTTTTGGCTCTTTCAGATCCACTGATGTTAAGAGCTCCACCCCTTGTGGTAGTCTCCAAAACCCCTCAGTAGACCCCAAATACCACAGTAACCTAGTATCTAGCAATGGGACAGAAGTGTACTGTTATCCCAGTCCACTGCATGCTGTGGCCTTACAAAGCCCCATCTTCAGTTGCACCCCTGATCAGGGAAATCCAGTAGCACTTGATGGAATGTCTGGAGTGGGTCTTGCAGGAGAAAGCCAAAACCCAAATGAAGGGTCATCAAATTCCAGGACTGCTGGATACATCAATAAGCTACTACAGCGAAGCACCAGTAAAATAAACCTGTTAAGCGTAAAACGAAATGACACTGCTGGCGGTACACAGGAGCAAAGACAAGAAATGTCCTATGGACAGCTGAATGGTCCTCAACTGCTGGAATCCCTTCAGCAAATATCAATGCCCTTAGAAAATGCACTGGAGCCTGGAAAAACCTCTTTACCACTAAACGGCAATCATCAGCAGAGGAATACACCTGCTTTGGAGCCAAATTCCGAAGCAACTGAGGTCCAGACATTGTGCCATGTCACACACTCAACACCTTCTATGGATCACCAAAAGAATCACTTTCCCATAAAGAATGCCACAAGCACGCCTCTTATTGAGTCTGAGAATTCACTCTCAGACAAAGGGAGTGCACAGTTTTCTAAGGACCCATCTACTGTCCCAAAGCCAGTAGAGAGGAGATCAAGTTTTAACTTTAGAAGAGAAGACAATAGAGCTTCTTTTGGTGATAAAAGCAGCACACCTCAATCAGAATTTGTCCATGCACAGTTTGTTCCAGCAGGGTCTCAGAGGGTGAAAGTGCGTCAGGCAGACAAGAAAACGAAATCCGTAAAACTGAGGAAAAAGAGCTCGGAGAAGCCTTCGGCAAAGAAACAGCAGCATAAACACTTGTCTCGAGAGTTCTGCACAAAAACACGAGCAGACTCAAAACAGTCCATCTCATGCAAAGGGAGAGTAACAAATCTGGAAGAATCCCAGATGAACTCTTGCTCAGATTGCAGCTGTAATGGCCTTTTCAACTCGCACTGCATCCAGAACAACCCTCACCTTCAACAAAGCCAAACCTCCAGGACCACCAAGTCTCGTAAAGCCCCAGAACCGATGCACCTTCCTCTAGACCAAgccaaaaagaaacaaagctcTCGGAAATGGCCTTCTTCCTCTGAGTTCCCTTTGCCCCCAGCTGTCCAAACCCAGAGATCCAAAGAAATGTTAAACTCACGAAAGGGGGCTATGGTAAGAAGTGTTAGTGCCAGGCCTCGCTCAGGTCAGTGGGGTTGTCATCCACGGGCCCTTCCTCACTCACTTTCCACCTCCTCTTACTTCAATTACTTGGAATCCAGATATCCAGCAGCTCCAATCTCCAGCCGCTACCCTCCTCGTTGCGATTCAGAGTTTTCGGAGTACTCTGCAGAGTGTGCATCACTCTTTCACTCTACTATCGCAGCAAGCAGTGATGGAGAGATGAGTGACTACACCACAAACCGGTTTGGAGACAGCGAGTCCAGTCAGGGCTCTCAGACGGCCTCAGACTCGGACAGCAGTCTTTCGCTGGATGAGGAGGACCTTttggaggaagaagaggaagatgaaggTGGTTTAGTTTGGGCGCAGGCTGCCATGGGGACCACGGCAGCTGGCTTTTCTCTTCAGCAGCAGCATCGGCCAGAGCCATCAGCCTGTCGCATTAAAGCTTCCAGAGCGCTGAAGAAGAAGATCCGCCGGTTTCAGCCAGCATCACTCAAGGTTATGACTTTAGTGTAGCTTCACTAAAGCTTGGAATGGATCCTGTTAAATAAACCTTTAGCATTACCTGAAGTTTAAGACTTGCCATTGTTGGACTTGGATTGGTCATGGTTTACTTGCACTTGTGAGCCAAGCAAACTCATAAGACTATTGGAGACTTCAAATGGCCAAACCTGATCACTGATCTCCACCCAACTTTACCTTAAACATGACAATGATAAAAATTTCTTACATTGACATGGTGACTTTGGACCTCTCAAAAACAACTCTGTTGATTTGTATAAAAACTGCTCAACAGGGCTGGTCAGCATCAGCCCTAGAAAGCCATAGTTTTGCCCCAAacttgattagcttgttcaggtgtgattgattagggttggaattaaactctgcaggactgtGGATCTACAGAAACGATGTTGGCTGCTCctgttatatattgtaaataaagtctttgcatatttttaatatctttgcAGAATTACTTATAATCAAAACCACTGTGTAAATAGCACGGTTGAAAACTGCTTTGGAAACAAAACTGTACTTGatgtaaatcaataaaaatgttgctattttacattca

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:1900108 negative regulation of nodal signaling pathway biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005770 late endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K22154 DACT; dapper

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139677 lncRNA upstream 98042 16741467 ~ 16796842 (+) True G94397
TU139623 lncRNA upstream 336747 16557836 ~ 16558137 (+) True G94365
TU139619 lncRNA upstream 351946 16541185 ~ 16542938 (+) True G94361
TU139569 lncRNA upstream 376058 16516813 ~ 16518826 (+) False G94324
XR_006252313.1 lncRNA upstream 513808 16361714 ~ 16381076 (+) False LOC122356350
TU139800 lncRNA downstream 26551 16926914 ~ 16938654 (+) True G94484
TU139822 lncRNA downstream 121501 17021864 ~ 17030075 (+) True G94501
TU139823 lncRNA downstream 121501 17021864 ~ 17029600 (+) False G94501
TU139885 lncRNA downstream 312584 17212947 ~ 17244969 (+) True G94543
TU140025 lncRNA downstream 989291 17889654 ~ 17889901 (+) True G94637
XM_043254574.1 mRNA upstream 27353 16834290 ~ 16867531 (+) True smoc2
XM_043254575.1 mRNA upstream 27353 16834292 ~ 16867531 (+) False smoc2
XM_043255698.1 mRNA upstream 68014 16620282 ~ 16826870 (+) True cdh23
XM_043255699.1 mRNA upstream 68014 16620282 ~ 16826870 (+) False cdh23
XM_043256179.1 mRNA upstream 300244 16593300 ~ 16594640 (+) True mrpl14
XM_043255894.1 mRNA downstream 75767 16976130 ~ 16985202 (+) True zfyve21
XM_043254671.1 mRNA downstream 521258 17421621 ~ 17422822 (+) True LOC122356173
XM_043255027.1 mRNA downstream 842596 17742959 ~ 17752932 (+) False zbtb8os
XM_043255026.1 mRNA downstream 842602 17742965 ~ 17752932 (+) True zbtb8os
XM_043254561.1 mRNA downstream 1045896 17946259 ~ 17952030 (+) True syf2
TU139637 other upstream 289501 16597781 ~ 16605383 (+) True G94378
TU139570 other upstream 376058 16515827 ~ 16518826 (+) True G94324
TU139572 other upstream 378125 16515827 ~ 16516759 (+) False G94324
TU139571 other upstream 378125 16515867 ~ 16516759 (+) False G94324
TU139427 other upstream 990535 15903946 ~ 15904349 (+) False nkx1.2la
TU139910 other downstream 659933 17560296 ~ 17575938 (+) False G94564
TU139911 other downstream 659933 17560296 ~ 17562248 (+) True G94564
TU140175 other downstream 1538810 18439173 ~ 18439583 (+) True G94760
TU140212 other downstream 1636529 18536892 ~ 18537443 (+) True G94789
TU140195 other downstream 1644989 18545352 ~ 18631718 (+) False G94776

Expression Profile