RNA id: XM_043256259.1


Basic Information

Item Value
RNA id XM_043256259.1
length 4215
RNA type mRNA
GC content 0.44
exon number 21
gene id rps6ka2
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23465789 ~ 23505692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCTTCACTACagcgtgagtgagtgtgaaGGTGGTTCTGAGGAGGACAGCTCCAGTCAGCTCTGCCGCGCCACAACCGAACTACCGCGAACAAACGTCCCAGAACCTGCCCGTTTGGCTCCGTCATGGCCTCCCCCCTCATAAGTGAGCATTATGGATTAGTGGAGGGGAGGCGACTGTAAATCCCCCGGTGTTGTGCTGATCTGGATTTAAACGCTGGACAGATAAATTGTCATTTGAGGATAGTAGCAGGCGAGCCGGGACAATGGATACGAACATGCGCAAATTTACGGTGAGAAGATGGTTTTCGGTGTACCTGCGCAGAAAGTCGCGATCCAAAAGCTCGAGTTTATGCAAACTAGAGGATGACAGCATCTTAAAGGAGTTTGATATCAGCCACCATGTGAAGGAGGGCTTCGAGAAAGCAGACCCGTCACAATTTGAGCTGCTCAAGGTGCTCGGTCAGGGCTCCTATGGAAAGgtGTTCTTGGTGAGAAAAATCAAAGGTTCAGATACAGGACAACTCTATGCCATGAAGgtcttaaaaaaagcaacactgAAAGTGCGGGACAGAGTGAGATCAAAAATGGAGCGAGACATTCTTGCAGAAGTGAATCATCCCTTCATTGTCAAACTTCACTATGCCTTTCAGACAGAAGGAAAGCTGTACCTTATATTGGACTTTCTCAGAGGGGGAGATCTTTTCACGCGTCTCTCAAAAGAGGTAATGTTTACTGAGGAAGATGTGAAGTTCTATTTGGCTGAGTTGGCCTTGGCTTTGGATCATCTTCATAGTCTGGGCATTATCTACCGTGATCTTAAACCAGAGAACATTCTCCTTGATGAAGAAGGCCACATAAAGATCACAGATTTTGGCCTGAGCAAAGAGGCAATCGACCATGACAAACGAGCGTACTCGTTCTGCGGGACCATCGAGTACATGGCCCCAGAGGTGGTCAATAGACGAGGTCACACTCAAAGTGCTGACTGGTGGTCCTTTGGTGTCTTAATGTTTGAAATGCTGACTGGATCCCTGCCATTTCAAGGCAAAGACCGCAAAGAGACAATGGCGCTTATTCTCAAggCAAAACTCGGCATGCCGCAGTTCCTCAGCCCAGAAGTCCAAAGTTTACTGCGggctctttttaaaagaaaccctACCAATAGATTAGGTGCAGGACCTGATGGAGTGGAAGAAATTAAGCGGCatatattttttgcaacaaTAGACTGGAATAAATTGTACAGACGAGAAATCAAGCCTCCCTTCAAACCAGCAGTGGGCCGACCAGAGGACACGTTCCACTTTGATCCTGAGTTTACATCCCGCACACCGACAGacTCGCCCGGTGTTCCACCCAGCGCTAACGCACACCAGCTCTTCCGCGGCTTTAGCTTTGTGGCCTCTAACCTGGGCCAAGAACAGCCACTGGCTGAGACCAAGCAAAACTCTGTAAACCCTATTGTACAGCAACTTCATGGCAACAACATTCATTTCACTGACGGCTACGAGTTGAAGGAGGACATCGGCATTGGAGCGTATTCTGTCTGCAAACGTTGCGTCCACAGGATCACCAGTGTGGAGTATGCTGTTAAAATTATTGACAGAGCCAAGAAGGACCCGTCTGAAGAGATCGAGATTCTTCTGCGATACGGCCAGCACCCAAACATCATTACTCTGAAAGATGTCTATGACGACGGCAAGTTTGTGTATCTGGTGATGGAGCTGATGAGAGGAGGAGAGCTGCTGGACCGGATCCTGCGGCAGAAGTGCTTCTCAGAGCGGGAGGCATCGGCTGTGCTCTGCACCATCACCAAGACTGTGGAGTATCTGCATTCACAGGGGGTTGTGCATCGAGACTTGAAGCCCAGTAATATCCTGTATGTAGATGAAACGGGCGACCCGGAGTCCATCAGGATATGTGATTTTGGGTTTGCCAAACAGTTAAGGGCTGAAAATGGTCTGCTCATGACACCGTGCTACACTGCAAATTTTGTGGCCCCTGAGGTCTTGAAAAAACAGGGATACGATGCCGCCTGCGATATCTGGAGCCTGGGAATCTTACTGTACACCATGCTGGCAGGTTTCACGCCCTTCGCTAACGGCCCCGACGACACACCAGAAGAGATCTTGGCTCGCATTGGCAGTGGGAAATTTGCCCTGTCAGGAGGCAACTGGGACACGGTGTCTGACGCAGCCAAGGATATTGTAACTAAAATGCTGCACGTGGACCCTCATCAGCGGCTGACCGCACCTCTTGTTCTCAGACATCCCTGGATAGTGAACCGCGATCAGTTATCTCAGAGCCAGCTGATCAGACAAGACGTTCAACTGGTGAAGGGGGCGATGGCTGCCACATACTCCGCTTTGAATCGATCACCTCAGGCCCCAAAACTGGAGCCAGTGCTTTCTTCCTGCCTAGCTCAGAGAAGAGGCATGAAAAGACTCACATCCACTCGTTTATAGCGCTCCAGGTCGGACACATGAGCTTCTACAGCTTTAAGAAATGTCAGAGCGCACCGCTTTCGGACGAGGCACCAGTCGACCGCCAAAGCATCCGGGGCAGAGCGGAAAAAATTGGATCGGCCACAGAGTGTCAGAGCGATCTCCAAAGAGCGACAAATGATCTGCCAAGCGTCTCTGCCGATGTCAAGAGATTGATGAGGGCCAGATGCGAACATCACAGCTGCCGGGGCTCAAAAACAGATCTCTCAGAGCCTGACGCTGGTTTTCTGTGTGCGATCCGCCCCTGTGGACTTCGGGAGTGTAGCATCatgaagtgtgtcattttaaCGGTGCGTAACGAAGATCACGGTTATCATTCCCAAACTGGGCGGACGGAAGCCCAGTCGCTCATAACAGTTGCTGTTCTTGCTGCAGACACTTCAATTAGAGCCATGTTAGAAGATGCTTTGGTCCATCATGGTGACAGTGCTGCATCTTTAGCATTATGAGCATCTTTTGAACATGCATGCCACATTTTCATGACAAACAAATGGTTCTTAAATGCTAATGAAAGCACAAGGAACatctttaatgttgtttttgtttttataacctACTGTAATGTCCTAGTTTcactattttatcttttttggtcattttattgGTATTATTTAATGCTGATACTAcagaaaacatctgtttttaattgtaatgtttctattttttattattattattattattgcatatttgcACCAcactggttttatttatttgtttgtttatttataaatgtttttgttaatatgcatgtttatttatattcatgtttaattatttaaatattgatgttTATTGAAGATATCCactaccttttttttaatatatatttatttttaagtgaccTTTATGCATAAACATGAAACCTAAACAAGTGCCACGCTTTTGAACTAGATCGACTGAAtgatgataaagaaaaaaaaaaaaatcgaatattgacatgtgcatgcattttcgttttcattttcatggaaatttaaaaaaaaaagtgtaaatatagTTTGAGCTAGACTACCTTTAACGACAAGATTTATGATGATTTATGTACTGAGGTCATTGCTATTACATCTGTCATAATCTTCTATTAGTTTATGTTAAAGTTTACCAATGTTACATCATTCTTCCATTAAATGTCACGACTTGCCTATATGCATTAgctcatgaaaatattttaggaaATCCATTTTCCACTCTCTGCTCTGTGAAACTTACTTAAGGATATTCAGAAATGATGTTTGCATGCCATACACAATTTGTAGCAGCCTCTGAAAGATCGACGATACCAGTACAGATGAAAATAACCTTACTTTTGTATGATAAAGTGATAGTCCAGTATTTTTGTATGAATATGATCAACACCTTTTCCAAAACGAAGCTCTGATACGCAGAGAAAACACATTCTGGGCTGTTTGAGGAACTTCAGCCAAACTTTATCTTTTGCTGGCGTGGCTTATTTTTTACATGTGAAAAGCtttaaatttttgttgttgctgatgCTGATTGTTTTTCCCTCCCAAAACAGGTATATGTGAGTGCATCAGTGCTTCTACTAGCTTAAGTTAATGCTGTACATCAGGTGTAGAGACGGTGACTACCTACCAAACAGCAATAGCATTAGGATCTGTCCTTGCTAGAAAAGAAAGCATACTTTTATGCCCTGTGTTGGCTTGTATACCAacagtttataaataaacaacctAAAAATGTGA

Function

GO: NA

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142211 lncRNA downstream 22006 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142128 lncRNA downstream 287693 23176802 ~ 23178096 (-) True G96117
TU142099 lncRNA downstream 311294 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 311294 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 435889 23017198 ~ 23029900 (-) True G96061
TU142295 lncRNA upstream 33086 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 421639 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 536836 24042528 ~ 24067735 (-) True G96279
TU142347 lncRNA upstream 564468 24070160 ~ 24070488 (-) True G96286
TU142361 lncRNA upstream 601741 24107433 ~ 24107818 (-) True G96295
XM_043255790.1 mRNA downstream 938 23447333 ~ 23464851 (-) True sft2d1
XM_043255791.1 mRNA downstream 977 23447333 ~ 23464812 (-) False sft2d1
XM_043254537.1 mRNA downstream 19623 23444179 ~ 23446166 (-) True prr18
XM_043254534.1 mRNA downstream 21726 23429646 ~ 23444063 (-) False si:ch211-130h14.4
XM_043254535.1 mRNA downstream 21726 23429646 ~ 23444063 (-) False si:ch211-130h14.4
XM_043254854.1 mRNA upstream 8123 23513815 ~ 23519654 (-) False rnaset2
XM_043254853.1 mRNA upstream 8123 23513815 ~ 23519653 (-) True rnaset2
XM_043254855.1 mRNA upstream 8123 23513815 ~ 23519044 (-) False rnaset2
XM_043255964.1 mRNA upstream 128024 23633716 ~ 23995593 (-) True csmd1a
XM_043255748.1 mRNA upstream 537944 24043636 ~ 24057904 (-) True angpt2a
TU142010 other downstream 470190 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 642530 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 643275 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 1022503 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 764622 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 837169 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 893431 24399123 ~ 24403644 (-) False fgf8a

Expression Profile