RNA id: XM_043256260.1


Basic Information

Item Value
RNA id XM_043256260.1
length 3354
RNA type mRNA
GC content 0.47
exon number 14
gene id zgc:172136
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15278360 ~ 15295194 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTGCAGGCACATCACTTTGGTGCACCATCGTTGATCACAAGCTCATCACCGCCCTGAAACGTATCTGAATCTACTTTCACTGGAAATGAAACACGCGGTGCTATTTACACGTCTTCAGGAGTGCTGGCAGACTCCTTAAGCACACAGCCTCACTCTGTTGGTGTGGTCGTGCTGAACATTTATTCTTGCTCCGAGGCTCGAGTGATCCTTCTTTATCTGTGCTTGCAGAatattCGAAATGAAGGAGCCAATATCTGTAGGGAAAGCATCTTGAAGAGAAAGAGGCCGTTTTGAGTGTGTgactgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgcggaCGCGGATGAGCTTTTATAGGCCATGTCTGTCCCCACCAAACAAGAGAGGACAGTATGTGTCCTCCTTCCCACCAAGGAGACATTGGACATCACAGTGGGgCTGAAAGCGACGGGTCAAGATGTGTTTCATCGTGTCTGTGAGCTACTCGGGGTTAAAGAGCTGCACTACTTTGGATTAACTTTAGTCAAAAACAATGAGCACATCTTTCTGGACTTGGAAGAGAAACTTGCTAAGTACTTTCCTAAGGAGTGGAAACAGGACTCGGGGAAGGGGTCACAGAGGAGGTCAATCCCTCCCCTGCTCTGTCTGAAGGTCCAGTACTATGTGGAGAACGGCAGGCTCATCTGTGAGCGTAAAGCGAGAAAACTGTACTACTATGATCTGCGGGAACGGGTCTTGCGCTCAGAATGCCGGCAGCAGGAGGAAGTGTATTTCCAGCTGGCAGGATACGCCCTGCAGGCCGATCACTCTGACCACCCCTCAGACAGCCACAGTCAGGGACACGCTGTGTATTTCCAACCCAAAGAATACTTCCCACCCTGGATAATTGCGAAGCGTGGCATCGACTACCTGCTGTGTCACGGGCCCAAGGTTCATAAAGAGCTGTGGGGGATGTCCTCGCGTGACGCTATCCTGCTCTTCATCAGAGAATCCTGCCGTCTGGAGGATGTCCCAGTCACCTTTTATCGCCTGcagaagGacaagaaagaagagaaaggtTCAGCGCTACTTGGACTTACTCTACGAGGAATGCAAGTGtatcagGAGGTGAACAACGTGCGTGATCTGCTGTATGACTTCCCCTGGTTTCACGTGGGACGGCTCACCTTTCTGGGGAAGAAGTTTGAGATCCAGCCGGATGGTTTGCCCTCAGCGAGGAAGCTGGTGTACTACACAGGTTCCGCTTTTCGTTCCCGACATCTTCTGCTGCATTTAAGTTCCTGTCACCGACTGTACCTCAGTTTGCAACCTGCTCTCAAACACCTGCGGCAGCTGGAGGAGACAGAGGAGAAGAAAAGGTACCGTGAATCGTACATCAGTGATGAGCTAGACTTGGATCAGCCGTGCAGCGAGGGCAGTCCCCGTCTGTCTCGACACTCCACCAGCAGCTCTGGCATCGAGGCGGACACCAGGCAAAACAGCGTCTCCGTAGAGATGGTTTCCATGGAGGGGAAAGAAAAGTCCTTCATCTCCGCTGTCAGTCACGGCTCCTCACGCACCTCTGGCATTGATACGAGCAGCAAAGCTCGGGCTGAGGAAGACGAGTGGCAGGAGGAAGATCTGCAGGATGTGGGGAAGGAGCCGGGAGAGGTCTCTGTGGACGACCCTGTGGATTTTTTGCGATTGGCTGAGCTGCTGGAGGGCGTGTCCGTCGACTGTCCCACCGTCCAATCAGACACTGAATTTAAAGGTCTACAAATGAGTTCAGTTACAGGCAACGATCAAGTAGACCATTGTGATCCAGAGAGCATAAAACAGGCTGCGAATCAGAAGTCTCGTAACCCAGCGGACCGCTACAGTCTGAGCCTGGATGACGTGCGACGGTATTCCCCTCTTCTCCCTCTGGGAACGGCATTGGTGCCAGACACCTCCGTCAGCTACACGTTTGGGCTTCCGCATTCCCCAACCTCCCTGTGTCCAGACAGTACTTCTTTCTGTGTCCAGCGCTCCACAAACTGCCTATCTCTGGACCTGCTGGATGATAACCAGCCGCTGGAGCTTGTCCTTTAAGAAACCCGAGAAGCTTCCTGTTGTCTGAAGCGCTAACGGGACCCATTTTTATCAGGAATTTTGTTAAACTCAACCAAGGCTGTGATGTGTTTCTATGCTGTTCAGCAGCAGGACAATACGAACAATTAATTGTGGGTTGTTTTACAGAACGTACAACATGTAGAACTTTCTACAGAATGAGTTAATGAATGATCTTAGAGGAGTCACGCGTTACTATGTGCTAAATCCGTGATAAAATGACTTGATAAAACCTTCTCTTCCAAGTAAATTCTAACCAGCTGTGACAACAATAAGCAGCGAGAGCTCACGGTGAACTTTCATTGGTCCAAATCGACATGGCTGAACTGTATAGGAAACATCAAAACGAAACATTTTCACGTTCTTTGTGAACAGACAAATTACCTGTGGGCTCGCACCAAGTTAGGACATGGTGTAACATGTTATGCTACAAAGTTTGCTTTGGGAAGGAAACGTTGGACCTCCGAATTTCACATTTGCTCTAAATTGACTTGAGAATGTCAAACTCGGAGGAGCATTCTCTGAATTACAGTGCGAATACAGAGAGAAGCCACCAGAAAATCCACtaagaagacaaaaaaacgTGTCTTGTACTCATGCAAATGCCGTACGTTCCTTTAAACAAAGACTTTAAACTTAATTTCCATTTAATGTATGCGATCAGTTACATTACTAACATCGATACATCAACTTATTTAACCATTTACAGTAGCACAGTATTTAATCCGTATCAAATACTCACGTTTCcagtttttttctgtcatgATGAAACATCGAACATGACCTTTTCTCCAGTTTCAAACAATAATTGTGTACACACACTACTCATGTCCCCAAGTTACAAAGCGTATGTGAAATGCTTATACCTGCAGTTGTAACAAGTTAAAAGGTCAACCCAAAATATTCCACGCATTTTTTCTATGAGCTCTAACCACTGGTTTAGTATATCACATAGTTCTTTACTACGCAAGTAATGTTGAACTGGGATGAACTTTTGTAAGAACAATAAGAACAAAGACTCATTCGCTGTTTACaagtcatgtttgttttgttcaggaTACATGGAGCTCTTTTGATTTCGGtaattacaaaacacacatcaaGCCCTCAGAGGTTGTGTACATAATGGTGGGTGTAATTTCTTTATCTATGTATTGTAAACACACATCCTATTAAAAGTATGCCCATATATGCGTTCCTTTCAGTGaaaggaaaaacaataaatatgaataaacatagCTGGTGTTAAATTCA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K16683 EX; protein expanded

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139091 lncRNA upstream 266662 15012550 ~ 15012780 (+) True G93978
TU139077 lncRNA upstream 600843 14678399 ~ 14678599 (+) True G93966
TU138846 lncRNA upstream 660792 14613092 ~ 14618650 (+) True G93833
TU139226 lncRNA downstream 22418 15317612 ~ 15317817 (+) False LOC122356934
TU139230 lncRNA downstream 28853 15324047 ~ 15329518 (+) True G94091
TU139242 lncRNA downstream 135104 15430298 ~ 15434168 (+) True G94101
TU139246 lncRNA downstream 139268 15434462 ~ 15453608 (+) True G94104
TU139252 lncRNA downstream 166179 15461373 ~ 15461752 (+) True G94110
XM_043255710.1 mRNA upstream 4208 15255074 ~ 15275234 (+) True fam135a
XM_043255711.1 mRNA upstream 4208 15255075 ~ 15275234 (+) False fam135a
XM_043256268.1 mRNA upstream 52720 15106458 ~ 15226722 (+) False LOC122357077
XM_043256048.1 mRNA downstream 655 15295849 ~ 15314656 (+) True tarbp1
XM_043256049.1 mRNA downstream 655 15295849 ~ 15307856 (+) False tarbp1
XM_043256050.1 mRNA downstream 19620 15314814 ~ 15318177 (+) True LOC122356934
XM_043256128.1 mRNA downstream 286674 15581868 ~ 15607881 (+) True golga7bb
XM_043254818.1 mRNA downstream 418999 15714193 ~ 15723743 (+) True slc25a28
XR_006252370.1 other upstream 4208 15255074 ~ 15275234 (+) False fam135a
XR_006252421.1 other upstream 53259 15106458 ~ 15226183 (+) True LOC122357077
XR_006252357.1 other upstream 912307 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 1369839 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 2062685 13216658 ~ 13216757 (+) True LOC122357146
XR_006252400.1 other downstream 655 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 569645 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 569645 15864839 ~ 15869803 (+) False hps1
TU139358 other downstream 578250 15873444 ~ 15877422 (+) True G94186
TU139356 other downstream 579077 15874271 ~ 15876678 (+) False G94186

Expression Profile