RNA id: XR_006252421.1


Basic Information

Item Value
RNA id XR_006252421.1
length 5842
RNA type transcript
GC content 0.48
exon number 52
gene id LOC122357077
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15106458 ~ 15226722 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTCCTGTCCGTCCTGATGTGTGCTGCTCTAATGAGTGGGTGGGAGGGTCAGGCAGTGCGACAAATAAGGACACGGTTCCTGCACGAGCTTTCATTCTCACTTTTATTTGCAAGTGCGCTTTGGACCCACAGCCGCCTAAAATGCGCTAATTAACCAAACAGGATTCGCTCGTGCTGTGTGTTTACGCCGGAATAATAAACTTTCTCAGCAAATGTTTTCAAGGGGCCCTTTCTCATGTGCCAAAGACGTCATGATTCGCTGTCTCGGATGGACTGTTTTCCTGTGGATCGTAAATTCCGTTCCTTTTACTTTGGGAATGACAGTGAATGAGAGACTAGATCATACATGTCCGCCCATGAAGCTGGAAGAGAAATGGCATACCAATGTGAACATCCACAGAGAATTCACAGGGTTTGATTTAGCTGAGAAGTTTCTTCTCAGAAAAGGCACTGTGACGGACAACAGGCCGTTGTTGAGACTGGGGAGTAAACCCTTGTTCAAACCGACAGAatctgtGTTCCCAAATGGTCTTTCTCATGAGTACTCCGTTATTGCCACGTTCCGGCTCAGAAAAACCACAAAGAAAGATCGCTGGTTTGTTCTGCAGATCTTTGATAAAGGTGGAGATACACAGGTGTCATTAATAGTGGATGGAGCTAAAAAAACTGTTGAGTTTTTGGCTCAGGGTTTTCTGAAAAACAGCCTCTTGTACGTGTTCAAGAACCGAGACCTGCATGCCCTCTTCGATCGACAGTTTCACAAGCTAGGTGTGTCTGTCGAGAGCAATGGAGTCTCCATCTACCTGGACTGCAAATTGATCGAGCGTCAGGTGACCGCTGAAAGATCTGGCATGAACGTGAGCGGACGCACATTCATCACCACTCGAGTGGAGGATGGACGTCCAGTGGATATTGAACTTCAGGAGATTCTGATCTTCTGTGACGCTAGAATAGCTGACCTGGACAGATGCTGCGATTCTCCTGGAGTTACGtgtGAACCTGTAGTGACCCACAACCCCACAGCGGCCCCACTGGTCACAGGATACCTCCACAGAATGCTGTCCATGCCTGCCCAGCTGCCCAGCGACCGATGCCACTGTCCCTCTCTGAAGGGGGATCAAGGGcttccaggtttggcaggacaTTCTGGACAAAAGGGAGATAAAGGACAAATGGGTTTAAAAGGAGATCCTGGACCTCAAGGCCTACCTGGTCTCAAAGGCGATAAAGGGGAACCAGGCCCGTCGGGTCAAGGAACACTCTCGGCTGAGCAGCAAGCTCAAAAAGGCGACCAgGGTCCCCCCGGAACTCCTGGAGAAAAAGGAGAAGCTGGCCTGCCCGGTCAACCAGGAGTACCAGGGAAAGAGGGCAAAAGGGGTCGACGGGGGGAAAGAGGAGAGAAAGGGACCCCAGGACAACCGGGTCAACCAGGAACATGTGATGCTGAAGCTGTCAAGGGTATGAAGGGTGACCCGGGTGTCGCAGGAATAGATGGACAGAAGGGCGATAAAGGGGATTCTGGTTTGCCTGGCCTGGAGGGAGCCGGTGGAATAAAGGGGCAAAAGGGTGAGGAAGGACCCCGAGGACCGCCGGGCCCCgTGATGACACCACATGGACTGAGACTTTCTGGACCTGAGGGGGATGGAGGTGAGAAAGGCCAGAAAGGAGAGAAAGGAGACCAGGGCGAAAAAGGTCCTGAAGGCTCAAAAGGTCTACAGGGCAATACTGGATTGCCTGGACTTACAGGGCCGCCAGGACTTGAGGGAAAACAGGGTCCGCCTGGCTCTGTTGGCCTACGTGGTCTTCCAGGAGATCTGGGCTCTCCCGGTCAGCCAGGACTGCCTGGAAAAGATGGAATGAAAGGAGAAAAGggcGATGCAGGCGGAGCGGCGGGACCGATAGGCCCCCCGGGCCTCAAGGGTGAACCAGGTGAACCCTGCTCTGTCGGACCTTGCAATGGGGAGGAGGTCGCGTCTGGTCTTCGGGGGTTGCGGGGCCCTAAGGGCGAGCGAGGTGTACCTGGAGTCCCCGGAGATGCTGGAGAGAAAGGAGAACCTGGTATAGGAATCACTGGACCCCCTggTCTGATGGGATATAAAGGAGAACCTGGAATTCAGGGTCCTCGTGGACCTCCAGGACCGCTTGGAACCCCAGGAATAATGGGACCTCCAGGCCCACAAGGCAGACCAGGACCCCCTGGACCCCCCGGAGAACCGACAGCACTACCTATTGTTGGAGACATGGGGATGTTACTAAAGAATGCCTGCAGTGTGTGTCAGACCAGAGTGCCAGGATTGCCAGGGCAGAAAGGAGAAAAAGGTTCCCTTGGAGCTCCAGGTATTCCAGGAATGGAAGGAGAAAAGGGGGATCAGGGTCTTCGGGGCCCAGCTGGTAATCCCGGAAAAGAGGGTCCGAAGGGAGTGAAGGGTGAGAGAGGCTTTCCTGGTCCAATGGGAGACAAGGGTGATgagGGGTCCCCAGGTGTGCCAGGGTTGCCTGGATCAACAGGCCGTATGGGCCCACAGGGACTGATTGGCAGACCAGGACCTGTTGGGCCCTCAGGACCAAAGGGAGAACGGGGCAGCGATGGACAGCAAGGCAGACCCGGACCTCCTGGACCTCCTgGTGCCCCATATGCGGAGGGCAATGGGATGAGCAGTCTCTACAAACTTCAGAATGGAGCTGCTAATACAGGTCAACCCGGACCGCCAGGGCCCTcgGGGCCCAAAGGAGACGAAGGAAGGATGGGTGAGCCGGGGCTGATGGGATTACCAGGTCTAGAGGGGCTGCCAGGTGCTAAGGGTGATCCTGGTCTACCTGGTCCACCTGGTGTTCCTGGTCCTACTGGAAAGCCTGGTCCTCGTGGTGAGACAGGAATCCCTGGAGAACCGGGAGAACGAGGGCCTGTGGGAGAGACTGGCTTCCCTGGACCTGAAGGGCCTCCTGGATCTTCTGGAAGGCCGGGAAAAGATGGAATTCCAGGCTAtacgGGAGCCACAGGCAGACCTGGAGACAGAGGTACTAAAGGAGAACGgGGAGATCCTGGGAttccaggagagagaggagtaCAGGGAGAAAGAGGCAAAACTGGAGAAAGAGGGATCATTGGTCCTCAGGGGCACCCTGGACAGAAAGGAGAACCAGGCACACTTTTAACAACACCAGGGACCGTCAATCTGTTGGGTGATACAGCTGCCTTGGAggaaattaaaacattcatccgAAATGAAGTATTGCGCGTATTTGAAGAGAGGTTTTCAGACAGTTCCGCTTTGCTACAGAAGACTCCAGCGGCTATATTAGCGGCGCAGGGTCGACAAGGTCCTCCAGGGCCACCCGGTAATGATGGCTCCCCAGGCCCCCCCGGAGAGTCAGGACCTCCAGGTCCCCAAGGTAGGAGCCAGAACCCGAAAGACTAAACGTGTTACGGACCTCTTTGCGCTGCTCCTACAATAGTctcatcacacacaaaaaaaaaaaccagatgCACAAgactgtgattttatttatatgactCATCTATTTCCCCAGCATTAAGCTGCGTTTTTTTGCTTGCTTCAAGGattccagttttttttccccctctttctctCGGTGGAAAATAGTGTGTTTATACGTATCTATTTTAGTTTGACTTACCGCATCAGTTGCTTCTCGGATTGATTGAGTTACACTGAGCTGAGCAGGTTGAGGTCATTTTGCTCGAGCTTTGAACCTCAAGTTCAAAGTAATCTAGCTCACAAAACTAGAAAATGAGAAAGACGGCCCTCACTAAAGGCATGCAAAAATGGCCGCTGATTGCGAAATTGGGTGTAAGGTGTTCACAGGAATCTAGCTAGCTACGTCAGACAAGAAAGAAGCAGATAGCTGCATGACAAAGTGGCATATGGTGCCGAGAGCCTGGCGGGACATATGAAGACGGATGAAGAACCGACCCAGAATAGGAGAATGTAATATCGCCCTGGACAGACTTGTGAGAGCAAGAAAGATAAAGAGAAGAAGTGAGCAGATGGAAAAAGCCACGCAATATCTCACTTTGTTGGATTAAGcccagccaaaaaaaaaaaaaaaccaaggaGAGGGAGAAAATAAGCAATTCTGAACATTCATCAAAGACTGGCAACTAACGTACTGCTCCTGTAGCGTTTCTCATCAATAATGACTTGCAGTTCGGCCCTGCTTCTTCTGTCTGAGTTCTTAAGGACCGTTAACCATTAGGACATGATGTTTTTCAAGATATAAGACTATGTACATTTGAGTTCTAAAAAAGGGATAAAACACATGCTTTgagtgtgtatacatatgttaTGTTGCGAACATTGTGTAATTGATATGCAGTTTGTGTCGATGCATTTTCAACAGCAGGTGAAAGTCTGAAAAGCCCATTTGTATCACTTTACTGTGCGTTGTGTAGACTTggagaaagaaatatttctcCATAATGCGAGGTATCAGGAGGAAATTAAAAACGGGAATTTTAAACTCCTGCTCAGtcagaaattcagcatttttttgttttttttaattttgtcagATGTTGATGTTGATGACGAAGTTTGTGGGTAATATTTCCTCATTATTTTTCGTCATCCTCCGCTGGAGCCTGTTCTCCTTTGGAATCCTCAAtttaaccactttttttttttttttttcacgtgaTGTGctaaaatgaatagtttatgaagaaaaatatCTCTGCAATCTCGGGTCACTTTACACGTCTGAGTCGCATTAATTCCACTCGGGGTCAGTTTTCTTGCGAGTTACACTAAATGAGAATTGGCAACGTTTAATACGTCTTTGTATCCTCTCTCGTGACCCGAAAGAGGTGGTTTTGCTCGAAAACGCTTCCAAATGCTGGTGTtgaatttaaatgcttttgctttgtgatttttgttgttgttgtgccGTATAGCTTtacttattaatttttatttcaagtgtgttcttaaaattaaatgatttatgtATCAAATTGATGTTTCTTGTGCTCATGAACCACATGGTTCATGCGATCTGAGATTCATATAACATCATAACATCTAAAACTACTTATGCAACTGTTTTACAAAGTGTAATCAGCCATGCTTttgtgtaacatttatttttttggggaCGGGAggtggcattttttttaatccctttgtaactttttgtatttaaatcttCAAGGTTGATGAAATCCTCTAACTcggtttcatttaaatgtatctaATTTATACTTTAAGCTGTATTTCCCTGCATGCCAAGAACATACCCAATTATACTTATTATGCTGTGTGTGCGATATCATACGAATGTCAAATAATGGATTTTGATAATCTcaatacaacatttttaaagatttttttcaaattcactGCTGGTTTCTTTGAGCAAATCTGCAAAGCGTATGGAAATACGGAGCCATTTTAAGATTAAttcaatgtaaatatatttctatgtaatatttcatgttttcattctCATTTTTCTTCCTCCACGAGGTTTAGTCTTGTTTTGTGAgtatgaaaaatgattttaagtGTAAGATCTTAGAAAGATGACAGTGTGCAGATGTTGCTGCGGGCTGCGTTTTGCTAGTACTGTATTGCAGCTCCCCCtgccgcttttttttttcctgttataaCTGTGCAGTATGAACTCCCCCTCAAGCAGGGGTGGTAATGCAGTGATTGTGAGCGGCCACAGGAAGCCATGATGTGATGCCGCAGGGTATCGAGGGCAGAAAGGGGAACGGGGTCAAATGGGCTTGGGACTTCCAGGAGGTCCGGGCCCAACTGGCCCACCAGGCTCACCTGGAATAGGTTTCCAGGGTCCCAAAGGTTCTCCGGGGCCCCA

Function

GO: NA

KEGG:

id description
K24340 COL19A; collagen type XIX alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139091 lncRNA upstream 93678 15012550 ~ 15012780 (+) True G93978
TU139077 lncRNA upstream 427859 14678399 ~ 14678599 (+) True G93966
TU138846 lncRNA upstream 487808 14613092 ~ 14618650 (+) True G93833
TU138844 lncRNA upstream 487808 14616797 ~ 14618650 (+) False G93833
TU138824 lncRNA upstream 491415 14614225 ~ 14615043 (+) True G93820
TU139226 lncRNA downstream 91429 15317612 ~ 15317817 (+) False LOC122356934
TU139230 lncRNA downstream 97864 15324047 ~ 15329518 (+) True G94091
TU139242 lncRNA downstream 204115 15430298 ~ 15434168 (+) True G94101
TU139246 lncRNA downstream 208279 15434462 ~ 15453608 (+) True G94104
TU139252 lncRNA downstream 235190 15461373 ~ 15461752 (+) True G94110
XM_043255731.1 mRNA upstream 95448 14873915 ~ 15011010 (+) False adgrb3
XM_043255732.1 mRNA upstream 95448 14873922 ~ 15011010 (+) False adgrb3
XM_043255730.1 mRNA upstream 95448 14873923 ~ 15011010 (+) True adgrb3
XM_043255733.1 mRNA upstream 95448 14873923 ~ 15011010 (+) False adgrb3
XM_043256277.1 mRNA upstream 264026 14839782 ~ 14842432 (+) True zgc:171579
XM_043255710.1 mRNA downstream 28891 15255074 ~ 15275234 (+) True fam135a
XM_043255711.1 mRNA downstream 28892 15255075 ~ 15275234 (+) False fam135a
XM_043256261.1 mRNA downstream 52177 15278360 ~ 15295194 (+) False zgc:172136
XM_043256260.1 mRNA downstream 53259 15279442 ~ 15295194 (+) True zgc:172136
XM_043256262.1 mRNA downstream 55862 15282045 ~ 15295194 (+) False zgc:172136
XR_006252357.1 other upstream 739323 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 1196855 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1889701 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 2517605 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 2531246 12571631 ~ 12575212 (+) True G93296
XR_006252370.1 other downstream 28891 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 69666 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 638656 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 638656 15864839 ~ 15869803 (+) False hps1
TU139358 other downstream 647261 15873444 ~ 15877422 (+) True G94186

Expression Profile