RNA id: XM_043256272.1


Basic Information

Item Value
RNA id XM_043256272.1
length 5739
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC122357079
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 7478034 ~ 7721812 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGAAGgctgtctgtgtatgtgtctgGCTGCAGTGTCGTAGGCTTGAGCCGCTGTAAAATCCCACAGGAGATTAGAGCGGGAACACGCGCTAGTCCGGACGCTTTAGAAATGGCAGCCCTAGGAGAGAGCAACAGACaggcaaaacaaacacaacagtaATGAGGAATGGATGAATGTTGTCTCATGGAAAACCTGCAcgctgtttctctctttttttaacccACCTCGTTTTCTCGTTCCGTCCGTCTTCGACAAGCTCACtcctccctcccttcctcccCTCTATCCTTCCGCTTcgctccccctctctctctctgtctctctctctctctctcattctctcttgcGCTCTCTCAGTGGAGGAATGTAGATAGAGGCTGAGTGTACGCCCGCTGCTCTGCACGATATCTACGGCTTACTCTACGGCGGTGGGTTGCTCATCAGATGCTGTTCTGAAAGGATTTGTACTGCTAACGGATTTGACAATTCCACCATCTCTTCCTGGACAACTCTGTACCTGCCACTGCCTCCTCTGCTGGGTTTACTGCTCAGCTTGCACATACCGGGATCTGTGCTGCAGGTCCCTTGCTCCCTTAAGGATGCTATAAATCAGAGTGAGCTTTGGTCGAGGAAAAAGGGACATATTGCTTCACGGTCAACGCCGAGTCCTTCTTCGTGAGGGAACCAGCTTTCTGGGATATGTATAGCTGACTCAGCTCTCGAATACAAGACCGTGAGTCAGATTAAGACCTTGAAAAAGGAATTGGTAAGAACGAGGGAGCCAGAGAGGAAAAATATGAGCCAGTTTTTAACTTTTACTGAACTCTACCTTCAAATATTGCAATGAATGGAAGTACGGGATCTGAGGATAAATCTAATGGTGGTGTCATCTGCAAAAAGAGGGATTTGATAATCTGACGACAGAGAGTGCTGCTGCAACGGCTGGTGCTCGGAGTCAACATGCAGATGATTTCACTCCTCCCTTTCCTTCCACCTTCTTTGCTCAGCAcctttatttaacatttgtacCATTTTATTGATCTTACGACGAGCTGGAAGTCATCTGGAAGTATTGGTGGAACTGGACTAAAGGACTGTCCTTTTTACCGGATTCTGCTATCGCTGAGATTTCTACCTCCGGAATTCTATTGGGTGTATGCGCTTGTctgattgtgagtgtgtgtatgtgtattagtTGTGTGTGGATGTGATTTGTCTGCTTTAATGTGTTCATAACTATCTCTGTGTTCTTTCGGTTTTTactttccaatttttttttccaatgtcTGGCATTGCCTGCCAGCGTTTCGCCTTGTGCTGTCCATGTCTGCCGAGTGCCCGGCTGTGGGGTTAACCCTTACCGTGCCACAGGCGAGATGAGTGACAGCTCTGGAACAGTGAACAACTCAGGGGCTATGGTACTGGAGGAGCCCGATGGGAGAGGTGGCTCCGGTGGACGTGAACAAGCCCAGGCCCCTGCTCGTGGTGGAATTTTAAGGTGTGGGAGCTGTGCCCTTTGGCCCCGCCAACAGACTTGGCTCTGCGTGGTTCCACTTCTCATTGGCTTCATAGGCCTAGGGCTCAGTCTGATGCTGCTGAAATGGATTGTAGTGGGTTCTGTGCGGGACTACGTGCCTACTGACTTGGTGGACGCCAAGGGAATTGGCCAGGACCCCATCTTTCTGTCCAAGCCTAGCACTTTTCCGAAGGGATCTGAAACCACCACCACAACCACTATTGGAGGGGTCAGCTCGGCCAGCCCCACCGTCACCACTGTGGTGCGGAGCAGGACTCGAACGGGAACTCCTCCGAATGTTCCCCCTAGGGGTGGTGGTGCATCCGGCAGCCAGGTGACGCAGAAGAGCCCCTCTACACGCTTTGTCACACGTAATCCCACCTTTACGACCACCGTGGCCTCTACCACAACGTCTACTGTCCATACGTCCACCTCCAGCCCCTCTCCCTCCAACCCTGCCGTTCTAAACGACTCCACCCAAATGTGGACCAGGGAGCAGTCATCCACGGAGAGGCACGTGACCACGCCTGGTCGAACCCACGTCAGCCGTAAGACACCATCACCAACTCTACCGCCTTTGAAATCGGAGCATTTCAAGCCGTGTCAGGAGAAAGACCTGGCCTATTGTCTGAATGACGGGGAGTGTTTTGTCATCGAGACCCTGAGCGGCCCACACAAACACTGCAGGTGTAAAGAGGGTTTCCAGGGCATTCGCTGTGACCAGTTCCTGCCCAAGACCGATTCCATCCTGTCTGACCCAATGGATCACTTGGGCATTGAGTTCATGgAGAGCAAGGAGGTGTACAAAAGACAAGTGATGTCTATCACATGTATCGCCATGGGGATCAGCTTTCTAGGCACCCTCTGCATGGCTCTGTACTGTCGGAACAAGAGAAGAAGGGAAAAGCTCCAGGCGCACTTAAAAGAAAGCCGTAGCCAGAAAAACTACAACCTCAACTCTTCCAGCCTGGCTCCTAAACCCAGCCTTAGGCCTCAGCAAGGCCTGCAACTCCAGAAATATTATAAGCCCACAAGGTTCTCGCCACCGCATGTTCGAGAGTCTGCTTTCGTACAAAGCACTGCTGCCTCCACCAATCCACAGGGCACACTGGCAGTGAAACACCCCAGGAACCTCTCCGGCCCAGGTAACGACCTACATCAGGATTCCTTTTACAATATGCAAGCCTCACAATCCTCAAAATCTTGGAGCAGCCATTTAGACCACAGGTGCGCTAGGAGCCTCAGGTCGGGTGGTTCTAGCCAAAGTCCTCCTGCTCCCTATCGTCCGTGCTCTATACCAATCATCCCCTCTGTCCACTCCTACCAGGATGAGGTCTCGTGTATGCAAACCGCCCCTACTGCTGGAAGCAGTCGTTCTAGTCCTCTAGAAAGCACAGCGGAAGCTTCGGCCGTTGATCAACAACAGTCCAACTTAACGGTCTCCAACCGTGTGGCTGGTAGACGGGAGGATGTGGCCTCACTTCTTGATGAGGCTCAGGAACAGCTCAGAGCGCTAGCACATGCCCAGAGGAAACAGGAGGACATCAGTAGCTCTGTCCCTCAGGGGGCCAAAGAGACTGTGTGCATCCTTTTAGCAAATGGGGGTGGACAAGGGGGAGTGGCCTCTTTTGGGCCTACGGAGACTCAGTTAGTGAGCCCCAGAGACACGCACAAAGATGCCACAAAGCCTGGCCAATGAGAAGGGATTGACAGGACTAACCACAAATGTCCCGAGTGTCCTGGGGCTTCAGAATACTCCCGCCAACACTGGGATACCACTGAAAGCTGCGGTTGAATTTCTGAGGACCTGCTGTGGGTGGAAGCGTGGGAGAGTGACAGTCTCGAACATGTGAaaagataatttatttatatgcatttatttaaggaGAAACTTAGAAAAAGAAACCAAATAGTCTGTCATCTCCATGGTGTTTttaactgtataaaatatacataaatatatataaatggatataaatatatgaattcaAACTGGTGACCAAGTACAATAAAGGAATATGGGAATGAGAAACTTTCTTTTGTAACGTATCAGCTCCACGTCCTCGATGCTTGgtggttcaaaaaaaaaaaaagttataaaaaaggAGTTTTTCCACTCGTTTCACTCATTTCCAGTCAATCTAAGCTTGTCCGACACACAATCTTGTGTTTTGCACCTGCAGCAGCTGTGTTTACTATCACCGTCCCAGTCAATGTCCTCTATCCTGCCAAGGAATATGGCTCCATCTGCCTTTGAAAACAGTGGAACGTGGATTACAATTGGACTAAACTTACAATTGGACTAAACGCTAATCGTATCCAGGCATGAGGTAACTGATAGTTAAGCACTGCCTCCAAGACATCGATTGGAAGAATTTGATGTGTTCGTCCGTTTGTGGAGCAATCTgcgttttgttttctgtgcctCGGTGCGTTCACTCTTCATTTGGGTTTGAATATGAGTAAAGATAAGCTAATGGAACAGAGCACATCGTACTGCACACCACCCGAGATGCACAAACAGACCGTCGGCACCTCTCTGGATGGACTGAGGAGATAACAGAGAGCAGGATTGGCCAACACAAGGAgcttttgtgggttttttttttcagttttggttcTTATGGAATTATCTGCTGCTTTCTGGGAAGGTGGGCGGAAACAGCAGTCACTATGAGTCTGTATGCTACCTTTGAATTGGGACATAATATTTCTGTGAATTAACAACCAAATGTggtaagaaagaaaaattaacAACAAATCTTTAGtgaagctgtttttttgtttccaatgtttttttgtttagttttgttttgtttggtttttttcagACCCCAAATTCACAGTCGTGCATGTTGATGGTATTGTTTTGCAGAACCAAGCCATGATagttcaaattatttaaagaaaaagctCCACgaagaagaaaatgtattatgattGACCTACGTCTGCTGATTTCAACCCAAATTGGCATAAAAACACATGAGTGGTCTGCTGAGTTTTATAGATCAGTCCTAATAGACCCATTTCTGAGAAATGCTCAATGGCTGCATTATATTGAATTGACTTTTTATGTGCTGTTGTTTCTTCTCAAGCATCTATCTTAAGACTGCCACCTGTAGTTTGATTTTTACACCTTCTTCAAAGCATGTTGCATTTGCCCACCATCAGATGTCTACCGTGCCAGCCATAACTCAAGGCaaagatgaaatgaaacatCTCCTGGTAAAAGAAAGCAAAGTAAAGGTTAGCCTGTGGCAGAAAGCAGCTGTAAGGGCAGTCAGATAAGACTCTCACTTCGTCTAACAACTTCCCCTGGCAAAAGCACTGACCTCATCAGTGAATTGCAGTGGGGTGGCATGTCTATCAAGATAATCATGCATCAGAAGTAATGTGACAATATTGCTGTAAGGGAAAGACAGGATAGATTTAGATCTTAAAGTTCTATTTCTTTatcaaacaaatacaattttaatattagaaaaCATGACAGAGTTAGTACTTTATTTAGCAGGCATCAGTTTGATTTGAGccgtttgtttttttgttttgtttttgtgacattttgtattttttcaaccAATTAAAATGGCATGTTTGTTAGTATGAGCATTCAtggttatttcttttttcaaattatgTGCATCTCATTTTATTGCCATACAGTAGATGACCAGAAatgccacacacacaacaaagaTGATACCACACTGCTAAGTGATCTATAAAACGGCAGACTAATTCATATGCAGGTCATAGCAGCAGATATATAAACTGTCCATCTGTTACAGCTCTTAATGTTCCTTTCAGTCGAAATGGTTTAAGAAAGTTTAATTCGAGTTGGACCATATTTTGTACACTAGTGCTTAAgtatattaaattgtttttgcacAGTAATTACAATGTATGGTAATTTATGCTGTCATTATTCCAGAATGTAAGGTGTGTGAGTTCATTACAGAAGACAGTATATTGCAAGACATGTTTTGACAGAATGCGCAAACTGCAACTGGTGTAACACGAGCACAACCGAAACTTCATGGTTCTGTATAACAGCCCCTTGATGTACTTTAATGTGCAATTTCAAAATCGAGAAATGAAATTTCTGTTCATTCTTGTATGTGAGAAACTGCATTAATGCCCTTCCAattgaaatagtttttcttttcatttagttcatttttttattttttcaataaagatGAATCTTCAGTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135665 lncRNA upstream 330816 7096154 ~ 7147218 (+) False LOC122356719
TU135661 lncRNA upstream 374512 7096154 ~ 7103522 (+) False LOC122356719
TU135660 lncRNA upstream 375034 7096154 ~ 7103000 (+) True LOC122356719
TU135663 lncRNA upstream 375034 7102167 ~ 7103000 (+) False LOC122356719
TU135662 lncRNA upstream 375446 7096154 ~ 7102588 (+) False LOC122356719
TU135739 lncRNA downstream 61828 7783640 ~ 7787307 (+) False sh2d4ba
TU135745 lncRNA downstream 88059 7809871 ~ 7810104 (+) True G91673
TU135763 lncRNA downstream 101470 7823282 ~ 7825341 (+) True G91681
XR_006252393.1 lncRNA downstream 386529 8108341 ~ 8111278 (+) True LOC122356873
TU135927 lncRNA downstream 470514 8192326 ~ 8194318 (+) True G91809
XM_043256416.1 mRNA upstream 6833 7365522 ~ 7471201 (+) False ccdc172
XM_043256413.1 mRNA upstream 83245 7365522 ~ 7394789 (+) False ccdc172
XM_043256414.1 mRNA upstream 105739 7365522 ~ 7372295 (+) True ccdc172
XM_043255880.1 mRNA upstream 184726 7108678 ~ 7293308 (+) True atrnl1a
XM_043255727.1 mRNA upstream 380106 7093144 ~ 7097928 (+) False LOC122356719
XM_043255336.1 mRNA downstream 49748 7771560 ~ 7785341 (+) True sh2d4ba
XM_043255335.1 mRNA downstream 49748 7771560 ~ 7785341 (+) False sh2d4ba
XM_043256014.1 mRNA downstream 81969 7803781 ~ 7806234 (+) True mtg1
XM_043256015.1 mRNA downstream 82674 7804486 ~ 7806234 (+) False mtg1
XM_043256322.1 mRNA downstream 114368 7836180 ~ 7838945 (+) True chchd1
unassigned_transcript_1926 other upstream 346538 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 2480138 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 3233993 4182499 ~ 4244041 (+) False G90660
TU135767 other downstream 114378 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 136886 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 584674 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 944456 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 1017261 8739073 ~ 8740089 (+) False sf3b5

Expression Profile