RNA id: XM_043256277.1


Basic Information

Item Value
RNA id XM_043256277.1
length 2094
RNA type mRNA
GC content 0.42
exon number 2
gene id zgc:171579
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14839782 ~ 14842432 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACATTTCCTCTTGCGCGTTAGTTGATGTTAGTCATGTGCTGAgctcatttacattaaaatatgctcatttttatggggttttttATGTTATTCCTGTATCATATGAGGCCATGTTCCTGTAGGAAATGAAGTGAATTGAGTTGTCCCTGCGGTCAGCAGTTATTTGGCAAAAGTTTCCTATCAAAATACATCTGACAAAAGATGAAGAACCACTTCAATGTTAGCTCCTTCCCCAGCCTGAGCGCCCCAGCGATTGTGGGAAACGCTTGCGGAATCGACTTCAGTCAAGACGGCATCTTTCTTCCCGTCTTGTACGGGATCTTCTTCATTATCGGCACTCCTTTAAACCTGTTAGCGCTCTTTGGGCTCTACAGACTCATCCAGTCAGAGAACGTCCTACCAGTGTATGTCATCAACCTTCTGATCGCGGATCTAATTCAACTTCTGACTTTGCCTTTGTGGATAGACTACTATGCAAACGGACACCACTGGCGCTTCGGACCCCGGAGCTGTCAGTtcatgggtttgtttttttacattagcatTTACGCGGCCATCTTCTTCATGTGTATCATCGCTCTAGAACGTCACTTGGCCATCGCCAGGCCTCTCAGTTTCAAGTATCTCCGTAACTTGAAGTTTGCTCGCTGGATTGCACTCGGCATTTGGATTCTAATTGCGGTGCCACCTGCCATTGCGTTCGACAAGCTCTTTCCCAAGCAGGGAAATTACACTCTTTGTATCGAGAAGTATCCCTCAGAGGGCAGTTTTATCACCTACAGGCTGATTACTCTGCTTGTGTCCTTCATCATACCCCTGAGTTTCATTGTTGGTCTCCACAGAGAGACCGTGCGCTCGCTGATGGCAATCAACTCGCTTTTATCCGAGGAGAAGAGGAGTATCAGGGGTCTGCTCACCCTTCTGGTGGCCGTGTTTGTCACGGTGCTGGGGCCGTATCATTTCATCGGCTGTGTGAAGTACGTCGGACTGCTGATACACAGCAGTCCTTGCGTTTGGGAGAAGGCTGTGTTTGTGCCCTATCAGTTAGGACGAGGCTTTCTGAGCCTTAACAGCTTGCTGGATCCTGTGTTTTACATCTTTCTCCGCAGAGACTTCCGTGCCGTCGCTGGCAAGTACTTGCCCTGCCTGAGGAGAGTGAGGAGCAGATCGTATCGGACAGAGAAAGCAACAAGCTCCACTCTAGACTGTGATTGAAAATGTCCCCCTGgttatgtatttcaaatacacttTGGACAAAGAACTAAGAAACTATGCCAAACTCATACAGAAGGCTTAATTAAATCTATGGTGGCGCCGTCATCTAAGACAGATGTTTCAGCatcattgttcatttttatttagaagacATTTGGCATTGCTATGCTTTTAGTTGGCCCTGCTAGCTCTTGACCGTCTTGTTTGTCTGTTGATCATTTCCATGCCTGCACTGCaggaatgatttttattttattttaattgatctCATATTATCTTAGCTTATTTGTCTCTCAGGATTTTCTACGTCTACActgctgaaacaaaaaaaaaaaaacatattaacatttcattatgtttttggCAGTAGACTTGGTGGTATAGGGTaaactttgtacatttttaaaagaacttgCCTTTCCTGCAGGATCACTGCTGATACTATTTCAGGTGCGAAAATATAACACGTCTAGTCAAATACATGCACATCTTTCTTATAACCAACTTTACCAAGAATTATATTTCTTTCTGAATTCTTTGTCTCTCAGTCATTTCCATGTTTGGAACAAAACTAGAATATTAATTctatttcattgtgtttttggcAGTAGACTTGGTGGTATATAGCTTAGatttctttgaatttaaaaggAAACTTCCTTTTTTCGCACATTCAGTGCTGATACTATTTTGGGTGTGAAACTGAAACCAAATCTAGACAAATACATATGCACATCTTTCTTTTAGTTAATATAATAACCAACAATTACATTTCTTTCCTATCCCTGAAAAGGTAACACACAACATCTGAATAAATCGGGTTGATGTTGTTTCTATACATATGACctgtttttctgaataaaatgattttatcttA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139077 lncRNA upstream 161183 14678399 ~ 14678599 (+) True G93966
TU138846 lncRNA upstream 221132 14613092 ~ 14618650 (+) True G93833
TU138844 lncRNA upstream 221132 14616797 ~ 14618650 (+) False G93833
TU138824 lncRNA upstream 224739 14614225 ~ 14615043 (+) True G93820
TU138823 lncRNA upstream 227782 14607396 ~ 14612000 (+) True G93819
TU139091 lncRNA downstream 170118 15012550 ~ 15012780 (+) True G93978
TU139226 lncRNA downstream 475180 15317612 ~ 15317817 (+) False LOC122356934
TU139230 lncRNA downstream 481615 15324047 ~ 15329518 (+) True G94091
TU139242 lncRNA downstream 587866 15430298 ~ 15434168 (+) True G94101
TU139246 lncRNA downstream 592030 15434462 ~ 15453608 (+) True G94104
XM_043256032.1 mRNA upstream 208933 14620165 ~ 14630849 (+) True phf3
XM_043256342.1 mRNA upstream 352282 14485066 ~ 14487500 (+) True gphb5
XM_043255317.1 mRNA upstream 446595 14377594 ~ 14393187 (+) True esr2b
XM_043255318.1 mRNA upstream 446595 14377594 ~ 14393187 (+) False esr2b
XM_043255316.1 mRNA upstream 446595 14377594 ~ 14393187 (+) False esr2b
XM_043255731.1 mRNA downstream 31483 14873915 ~ 15011010 (+) False adgrb3
XM_043255732.1 mRNA downstream 31490 14873922 ~ 15011010 (+) False adgrb3
XM_043255730.1 mRNA downstream 31491 14873923 ~ 15011010 (+) True adgrb3
XM_043255733.1 mRNA downstream 31491 14873923 ~ 15011010 (+) False adgrb3
XM_043256264.1 mRNA downstream 264026 15106458 ~ 15226722 (+) False LOC122357077
XR_006252357.1 other upstream 472647 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 930179 13739607 ~ 13909603 (+) True G93613
XR_006252431.1 other upstream 1623025 13216658 ~ 13216757 (+) True LOC122357146
XR_006252318.1 other upstream 2250929 12586886 ~ 12588853 (+) False mgme1
TU138047 other upstream 2264570 12571631 ~ 12575212 (+) True G93296
XR_006252421.1 other downstream 264026 15106458 ~ 15226183 (+) True LOC122357077
XR_006252370.1 other downstream 412642 15255074 ~ 15275234 (+) False fam135a
XR_006252400.1 other downstream 453417 15295849 ~ 15314279 (+) False tarbp1
XR_006252368.1 other downstream 1022407 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 1022407 15864839 ~ 15869803 (+) False hps1

Expression Profile