RNA id: TCONS_00011038


Basic Information

Item Value
RNA id TCONS_00011038
length 590
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id XLOC_005002
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 48328866 ~ 48330894 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGAAGACACTTACAATCCACTCATCCTGTGATCATCTGTAGAAGCATTGTCTTTTCACTGTTTCAACAATGTGGCATGGAATAAAGCAGCATTCTCCCACAATCTCACGTGTTGGAAAGAGGGCGGTGTGAGGACAGAATACAGGAGAATGTAAGAAGTGCATGATAAAGATGAGTGGCAGATAAATGTAATGTGCTGTAATGTGACGCTGCGTGAATTCCTTCAGTGGCTGGAGATGTTTATCGTAAAGGGCGTTTCTTACTgtatatctggagctgtctgggTCCTAAAGCCTGCCACACAGCACTGCAAACAAAGAAACAACACCATGCATTATGCAGAAGCTAAATAAAGCAAGCATCAGATAATAACACATTATGTAGACATATTTTTGTAATATGGTAATGAGATTCAGGGGTTTATATGAAGTATAGGTTCATGCAAAATCTACTATCTTACTCCATTCCTTTGTTTTTTGGGTTGAAATATGAACTGAACATAGTTTTACatgttgcttgttttattttgcttcaaTGGATATATTGCAacataaaatctaaaaacatttgTTGATCATATCTAAGATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010776 lncRNA upstream 718536 47606871 ~ 47610330 (+) False XLOC_004992
TCONS_00010777 lncRNA upstream 718536 47608339 ~ 47610330 (+) True XLOC_004992
TCONS_00011036 lncRNA upstream 748300 47580022 ~ 47580566 (+) True XLOC_004991
TCONS_00010775 lncRNA upstream 1292446 47035721 ~ 47036420 (+) True XLOC_004984
TCONS_00009729 lncRNA upstream 1635423 46683212 ~ 46693443 (+) True XLOC_004976
TCONS_00011039 lncRNA downstream 83633 48414527 ~ 48419991 (+) False XLOC_005005
TCONS_00011040 lncRNA downstream 83646 48414540 ~ 48416504 (+) True XLOC_005005
TCONS_00011041 lncRNA downstream 217200 48548094 ~ 48573203 (+) False XLOC_005007
TCONS_00011042 lncRNA downstream 217210 48548104 ~ 48555664 (+) True XLOC_005007
TCONS_00011043 lncRNA downstream 294802 48625696 ~ 48627365 (+) True XLOC_005008
TCONS_00009778 mRNA upstream 1267 48319221 ~ 48327599 (+) True XLOC_005001
TCONS_00009777 mRNA upstream 61000 48241841 ~ 48267866 (+) True XLOC_005000
TCONS_00009776 mRNA upstream 88353 48220584 ~ 48240513 (+) True XLOC_004999
TCONS_00009775 mRNA upstream 88738 48216662 ~ 48240128 (+) False XLOC_004999
TCONS_00009774 mRNA upstream 108247 48204891 ~ 48220619 (+) False XLOC_004999
TCONS_00009779 mRNA downstream 9239 48340133 ~ 48342259 (+) False XLOC_005003
TCONS_00009780 mRNA downstream 9240 48340134 ~ 48341575 (+) False XLOC_005003
TCONS_00009781 mRNA downstream 9298 48340192 ~ 48342255 (+) True XLOC_005003
TCONS_00009782 mRNA downstream 59821 48390715 ~ 48404672 (+) False XLOC_005004
TCONS_00009783 mRNA downstream 64799 48395693 ~ 48404366 (+) True XLOC_005004
TCONS_00009746 other upstream 1390911 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other upstream 1390920 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009724 other upstream 1725311 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009703 other upstream 3701859 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 6868232 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009795 other downstream 485266 48816160 ~ 48825502 (+) False XLOC_005016