RNA id: XM_043256328.1


Basic Information

Item Value
RNA id XM_043256328.1
length 1926
RNA type mRNA
GC content 0.46
exon number 2
gene id six3a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6704087 ~ 6707392 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCACGGTGGATTTAGGGGGAGATATTATGAGGCTGGTGTCATTAGGCGATAGCTATTGAATCATTCAATCTGAATTCGTCGTTCTTTTTTCCTTCGCAAATTTCATTCTCTCTCAGGTCATTTCCATGGTTTTCAGATCGCCTTTAGAGCTTTATCCCTCTCATTTCTTTCTGCCAAACTTTGCTGATCGCCCTTTGCTCTTGGCGAGCAGTGCGCCCAGCACCAGGTCTCCCGAAGACTTGTCAATGTTTCAGCTACCGACCCTAAACTTCTCTCCGGAGCAAGTGGCGAGCGTCTGCGAGACGCTGGAGGAGACCGGGGACATCGAGCGGCTGGGTCGCTTCCTGTGGTCGCTTCCAGTGGCACCGGGTGCTTGCGAGGCGATCAACAAGCATGAATCCATCCTGCGCGCCCGGGCTGTTGTTGCCTTTCACACCGGCAATTTTCGCGATCTCTATCACATTCTGGAGAACCACAAGTTTACCAAGGACTCGCACGGCAAACTGCAAGCGATGTGGCTCGAGGCTCACTATCAGGAGGCCGAGAAATTACGCGGGCGTCCCCTAGGACCGGTTGATAAGTACAGGGTGCGAAAGAAGTTTCCCCTGCCTAGAACCATCTGGGACGGCGAGCAGAAGACGCATTGTTTCAAAGAGCGAACGCGGAGTCTGTTACGCGAGTGGTACCTTCAGGACCCCTACCCAAACCCCAGCAAGAAAAGGGAACTGGCTCAAGCCACTGGACTCACTCCTACACAGGTCGGAAATTGGTTTAAAAACCGGAGACAACGAGACAGGGCAGCGGCAGCAAAAAACAGGCTCCAGCATCAAGCAATAGGGCAGAACGGCATGCGGTCCCTCTCGGAGTCCGGCTGCACCCCACGCAGCTCGGCGGAGTCGCCGTCGACCGCGGCCAGTCCCACGACCAGCGTCTCGAGCATGACAGAGCGAGTCGACACGGGCACGTCGATCCTTTCAGTAACGTCAAGTGACTCGGAATGCGACGTATGATACGcaaaagagaaatatatgcAGGAAAAAGGACCTGAACGAACTTGATTAATTATCGGGGAAGATGAAAAAGGACCAAttgatattactattataaaaagaaaaacataaaagcacGTCTTTTTTCAAGCGCTTTCAATGGACCCCACACCTTTCCCTCTCCTCACCACCACCACCCCATCACttgcatgatatatatatatatatatctaaatatatattttttctttttttgtatatggGGAAATGCCCCACGTTTATTATGTCTACCAGGACCACCGCGAAGAGGGAATTACCAGAAACCGGTGTCCATcgcctttttttctgttttagtccGCGTGACGACGAGCAGCCAGGATGCAATCCTCTTTTCCTTTATGTTCATCAGACAATCATTTGAGTCGTAAGCACCTTTTTACTACACTTCTGTCACTGCCTGTGTGGGGTACTGGTCAAATGTGGAACTGAATCGTTATGACTgtatcagatttttatttttatttcgagattttatattgaattatgTATATCTTAAATAATGCGATCATTCTCCCAGTCTGTAATATATGTGTAGAAATAAGTCTGTAAATAATATTGCTATACCCATTCTCTTTTCTATCCCTGTTCACTTTTCTTGGCTTGGTGTCCCTACATAAAACTATTCGTCAAAACGTAAATATTAAGTGCTCTAGGCGGttttgtttccatgttttacGCCATGAAAAGAACGCTAGTGACCATGAAGCATCAGTCGAGATTAATGCAAAAGACTAAATATTGGATATCGTCATCGGCTGACCAAGTCTATTTCATGTTTCCAGTCCAGCGCTTATAATTCAATGTTACTTTCTTGCGTGTTTCTGTTAATGTATACGTTTCTAAACTGAAAATACAGTATTCAATTTTGTTATAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135514 lncRNA upstream 4918 6693662 ~ 6699169 (+) True G91492
TU135295 lncRNA upstream 251011 6452744 ~ 6453076 (+) True G91343
TU135268 lncRNA upstream 333559 6370210 ~ 6370528 (+) True G91324
TU135252 lncRNA upstream 346071 6254603 ~ 6358016 (+) False akt3a
TU135248 lncRNA upstream 412644 6279559 ~ 6291443 (+) False akt3a
XR_006252288.1 lncRNA downstream 15888 6723280 ~ 6755554 (+) True LOC122356144
TU135555 lncRNA downstream 107618 6815010 ~ 6861516 (+) True G91529
TU135574 lncRNA downstream 235175 6942567 ~ 6942795 (+) True G91545
TU135639 lncRNA downstream 339549 7046941 ~ 7047247 (+) True G91594
TU135660 lncRNA downstream 388762 7096154 ~ 7103000 (+) True LOC122356719
XM_043256255.1 mRNA upstream 49854 6561232 ~ 6654233 (+) True camkmt
XM_043256147.1 mRNA upstream 150761 6545507 ~ 6553326 (+) True slc3a1
XM_043255874.1 mRNA upstream 160858 6516883 ~ 6543229 (+) True ppm1ba
XM_043254849.1 mRNA upstream 252579 6444614 ~ 6451508 (+) True abcg8
XM_043255437.1 mRNA upstream 274700 6396742 ~ 6429387 (+) False cep170aa
XM_043255743.1 mRNA downstream 133205 6840597 ~ 6843540 (+) True LOC122356727
XM_043255744.1 mRNA downstream 133211 6840603 ~ 6843540 (+) False LOC122356727
XM_043255745.1 mRNA downstream 133295 6840687 ~ 6843540 (+) False LOC122356727
XM_043255875.1 mRNA downstream 137340 6844732 ~ 6848243 (+) True LOC122356807
XM_043255492.1 mRNA downstream 142143 6849535 ~ 6860874 (+) True tm9sf3
TU134595 other upstream 1706191 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 2460046 4182499 ~ 4244041 (+) False G90660
TU134245 other upstream 2460046 4182499 ~ 4244041 (+) False G90660
TU134242 other upstream 2460046 4241132 ~ 4244041 (+) True G90660
unassigned_transcript_1924 other upstream 2632188 4071806 ~ 4071899 (+) True trnai-uau_4
unassigned_transcript_1926 other downstream 424034 7131426 ~ 7131496 (+) True trnag-gcc_68
TU135767 other downstream 1128798 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 1151306 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 1599094 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 1958876 8666268 ~ 8683052 (+) False pcnx2

Expression Profile