RNA id: XM_043256341.1


Basic Information

Item Value
RNA id XM_043256341.1
length 1683
RNA type mRNA
GC content 0.42
exon number 7
gene id slc66a3
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12180247 ~ 12183265 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAATGAGCTACGGGCGCTGCGGAGGGTCAAATCTCGCGCGGCGCGCTGATGTGTGCGGAAGTGCCGCTGATTCCGATGCTAACATCTGGAGCCGTTTTCTTGCCAAGATCCCACGAGCGGATCACAGAGAGGGATCAACAGAGATGGAGGGCAATTTGACGCTGCATTTGGCGAATTTCAGCACTCTGTTCGTGTGCATGGTGCTGAAGTTCCCGCAGATCTTCGTGCTGATGCGAGCCAGAGCCACTTCTGGAGTCAGTCTGAACAGTCTGCTGCTCGAGCTGCTCGGGTTTATAGTGTTCATGTCCTACCAGATGTATTATGACTACCCACCGCTCACATACCTGGAGTATCCCATCCTCATTGCACAAGATGTCATTGTGCTCCTGTTAATCCTGCACTACAACAGGAACATGAAACACAGCCTCATATACGCAGCACTGTTCGTGGGTGGATGGCAGCTGCTTACGGTACAGAAGTGGGTGATTGATCTGGCCATGAGTTTGTGCACTTTCATTAGTGCTGGCAGCAAACTGGCACAGCTTCAGTGTCTGTGGCGCTCAAAGGACTCCGGGCAGGTCAGCGCTCTCACCTGGGCTCTGGCCACATATACGTGCCTGGCACGGATCTTCACCACCGTCATCACCACCGGAGACACGCAAGTTCTCATACGGTTTGTGGTCATGAGCGTTCTGAACATGTGGGTCACAGTCACTGTCGTCTACTACAAACCTCGTGCAGTGAAACAGGATTAAGAGGATGCAGCTTTCTGCATACGGTTTATCTCATTGTTTGCTGTTggagttttgttttctttgtagaACTAAACTAGATTTAGGTCAGGTGCTATTTGAGAGTAGCGCTTTCTATATtgcaattaaaaccaaaaatcgTATCATAATGCTCCGGTTTTCCCAGTTGACGTATATTAGACCATTTTTAGCTAGTTTTACACTATTTATGGTCAGCTTAAAGTTTTCCACACGTTTATTTAGCTTCTTTGCAAGCACTGGTATTTTCTTCAGAACATGCAGATCTCTTATGTATTAGAATGTGTGTCCGTGGGATTAAATCTCATTTTCCCATGAAGTAAAACGGATACGAATGTTGTAGACTCACAAATGATGAATTGCATTTGATATAAGTACATATCAGAAATCGGACCAAATATGTGATGCGTTATAAAGCAGTAAAAACATTCCTATCCTTCACTGATTCCAACACTTTCTTATAATTCCTGGTAGTTTTCTCGCCTGTAACTCTCTGCATTTGTACATGTTCAGATATACTGTTTTTAAAGTTGTTATActgtaacaaatatttttttgagcaattttcAAGCTGAAGAGctgttaaaattgtttaatatcaGGTTGCTGAACAGGCCGTTTACTGTAGTTCACGAAGGGGTGATGTTTACAATACGCTGAAATATGCACTATTTTTATACTAAGCTTCATCTATATTGATCTGTATTATACATAATGAACACGTGGTTATCATTAATGCAAAACTAATCAACTATAGGACTCTGAAGTGTTCTAGTACAAGATTAtaacttgaaaataaatgatttcaatGACTATTAGGTCTAAAGCACAACTGAATGTTTTTGTGAGTACTTAATAGAGGTTcctttgtattttataaatcaataaacattcCTTTTGTGTGACAATGTG

Function

GO: NA

KEGG:

id description
K23680 PQLC3, SLC66A3; solute carrier family 66, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137897 lncRNA upstream 1781 12121939 ~ 12178466 (+) True G93182
TU137867 lncRNA upstream 72763 12104733 ~ 12107484 (+) True G93169
TU137865 lncRNA upstream 79892 12099606 ~ 12100355 (+) True G93167
TU137864 lncRNA upstream 81021 12098694 ~ 12099226 (+) True G93166
TU137844 lncRNA upstream 100345 12077637 ~ 12079902 (+) True G93153
TU137907 lncRNA downstream 2803 12186068 ~ 12189038 (+) True G93190
TU137921 lncRNA downstream 19477 12202742 ~ 12267066 (+) True G93200
TU137949 lncRNA downstream 179800 12363065 ~ 12374131 (+) True G93222
TU137945 lncRNA downstream 196444 12379709 ~ 12380851 (+) True G93219
TU138003 lncRNA downstream 202042 12385307 ~ 12385618 (+) True G93267
XM_043256336.1 mRNA upstream 7904 12144638 ~ 12172343 (+) False sobpa
XM_043256338.1 mRNA upstream 7904 12144638 ~ 12172343 (+) False sobpa
XM_043256334.1 mRNA upstream 7904 12144639 ~ 12172343 (+) True sobpa
XM_043256335.1 mRNA upstream 7904 12144639 ~ 12172343 (+) False sobpa
XM_043256337.1 mRNA upstream 7904 12144640 ~ 12172343 (+) False sobpa
XM_043254988.1 mRNA downstream 95291 12278556 ~ 12285045 (+) True arg2
XM_043254990.1 mRNA downstream 110940 12294205 ~ 12298725 (+) True rdh12
XM_043254533.1 mRNA downstream 140779 12324044 ~ 12327519 (+) True si:ch211-10a23.2
XM_043254532.1 mRNA downstream 141242 12324507 ~ 12327519 (+) False si:ch211-10a23.2
XM_043255921.1 mRNA downstream 208494 12391759 ~ 12395946 (+) True ndufaf1
TU137630 other upstream 575395 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 576023 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 602388 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 962072 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 965160 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 388366 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 403621 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 1033393 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1556342 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 2170851 14354116 ~ 14367135 (+) False frmd6

Expression Profile