RNA id: XM_043256343.1


Basic Information

Item Value
RNA id XM_043256343.1
length 2561
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC122357113
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12488581 ~ 12493739 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtttatttggttgtATTTTTGCCCGTGGGACTTCGAATatgttaaataagaaaatataacacaaatcaaaaatgtaataaattaatattgtttaaaaaaatcatttgaatgatAGATCCACTCCTTCTCAGAAAACAAAACGGAAACTGATCTCTGTTCTTACAGCTGCGTGCAAGAgctgTGCTCCTGAAggttaaattacaaaaatggcAGAATCTTCTGATGATCAAGATCCTTTTAACTGTCCGATCTGCCTTCAACTTCTGAAGTGCCCAGTAACGACAATTTGTGGTCACAGTTTCTGTATGACCTGTCTCAATGAATTCTGGGATGTGGAAGATCAGAAGGGCGTTTACAGCTGTCCTCAGTGCAGGCAGACATTCAGCCCAAGACCATCGCTCAGCAGAAACACTGTGCTGGCTGAAGTTGTGGAGAAAGTGAACAGAGAAGCACCAGAAGCAGGAACAGACTCTCCTGTCCTGAGTTTTGCTGTGTCTGGAGACGTGGAGTGTGACATCTGCATAGAGACCAAACTGAAAGCCATAAAGTCTTGTCTGGCATGTTTGGCTTCTTACTGTGAATCTCACATTCAAACTCATTATACATCTCCTGCTTTAAGGAGGCACAAACTGGTCAATGCCTCGCCATATCTAGTGGACCAGATCTGCTCCCAACATGATAAACTTCTGGAGCTGTACTGTTGCCAAGATCAGCAGCTGATATGTATACAGTGTGCTCTGATTAACCACCAAAaccacagcatgacttcacccgCAGCAGAAAGACAAAAACTACAGgAACAGCTGAAGTCAAATCAGGATGATCTGCAAGAGAGCATGCTTCAGCGAGAGATCAAGGTGAAGGAACTAAGGCAAGCCATGGACTCTTATAAACTCTCTGCAAAGGCAGCGGAGGAGCACAGTGAGAAGGTGTTTACTGAGCTGATCGGGTCCATGGAGAAACATCAAGCAGATATAACAAAGATGATCGGAGCTCAAGAGAAAGCAGAAATAAGCAGAGCTGAAAATCTCATTCTTACACTGGAGCAGGAGATCAGTGACCTGAGAAAGAGACATGATGAACTGGGGCAGCTTTCACTGGCAGAGGACAACATTAGTTTCATTCAGAAATTCTCATCTCTTACCCGCTACCAATGTTCAGACTTGTGCACCATCTCCATCAGTCGACATCTGACTTTTGAGGAAATAGAAAAAGTTGTCAGTGAGCTGAAAAGCCAACTAGATGATCTATGTGAACAAGACGTATTGTGGATATCTGAGAAagTTGCCACTGTCCATTTAATGGCGAacagtgaaaaatgtaattatttgccATCCCATCCCAGGACCAGAGAAGAATTCCTTATATaCTCTTGCGATCTGAATCTGAATCCCTCATCAGCCTGCAGTCAACTTTCTGTAAACAACAAGTCCGTGTCAAGAAATAATTCTCAACAATACAATATGGCTACACCAATTTCTTTTAGCCGAACATATTATGTAAGTACAGCCCAGGTACGTACATACCAGGTGTTGTGTAATGAGCGTATATCTGGACGCTCTTATTTTGAAGTTCAGTGGAGTGGAGCAGGTTGCTCTATTGCTTTCTCATACGACCAGATTAGTGAAGGAGGTGGAAGTTTTATCTTTGGCTTTAACAACAGATCCTGGAAATGTGACTTTCCAGCAGCTATTCTTAATGTGTGGCATGAAAACCAACAGACTAAGACTTGCTTGGTGTCTAAAATTGGCGTGTTTCTTGATCAAAAAGCAGGAACTCtgtctttttacaatgtcactgACAAATTGACCCTCCTACACAGAATCCAGACCACATTTACACAGCCCCTGTACCCTGGGTTTTCATTTGATAATTGGGGAGATTACTCCTCTGTGGAAATTTGCGATCTGTCATCTGCAAAGCAAAATGAGTAAATCTAGTTAAAAGTGATAGATTTTTTTGCCAGTATACTTTAGTCACCTTGAATCTGAATTCAAGAGATTTAAAATtgatatatatctttattttgtggaATAACAGCCTCTTTCTTCCTGTTATGTGGTGTGATTGCATCTAAAAAGATGGGTTGTTCTATCAAGTGTTATAGATTTGATTGACCAGTTTCTATTATAGTGGATTCAGGTTGAACTTCTATGGCGAATTGAATGTATAATGCacaataaattacttttttgtacaAACAGAAGAATTGTTTGTATGCCAACAGCAGAACGGGTCCTTGaaaataatggatttttttttttttttgctggtctatttttttgtatttacatacacGTGTGTTGCATTAAAATTTCTGGAATGTTATGTACagtaattatttgcatttttgatgtttaattgtatatattactATTAGCGTATGGATGCACCTTATTTTGCATGTAAACATGCTCTATGTTTGTAAGCTATGCTTGGATTTTCTTGTATGTGTaggttaaagaaaaataataaagtaaggCTCTGTAACGCATGTTATAATTGGATGAGgaggagaagaatggttgaataaagttatttgttattctattagcttta

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138024 lncRNA upstream 38135 12448374 ~ 12450446 (+) True G93280
TU137947 lncRNA upstream 51938 12431949 ~ 12436643 (+) False LOC122357045
TU138003 lncRNA upstream 102963 12385307 ~ 12385618 (+) True G93267
TU137945 lncRNA upstream 107730 12379709 ~ 12380851 (+) True G93219
TU137949 lncRNA upstream 114450 12363065 ~ 12374131 (+) True G93222
TU138036 lncRNA downstream 40246 12533985 ~ 12535064 (+) False jag2a
TU138044 lncRNA downstream 74745 12568484 ~ 12569100 (+) True G93295
TU138033 lncRNA downstream 102183 12595922 ~ 12597301 (+) True G93285
TU138058 lncRNA downstream 108452 12602191 ~ 12602541 (+) True G93306
TU138293 lncRNA downstream 663191 13156930 ~ 13158438 (+) False tasp1
XM_043255844.1 mRNA upstream 2919 12450571 ~ 12485662 (+) True brf1a
XM_043255843.1 mRNA upstream 2919 12451643 ~ 12485662 (+) False brf1a
XM_043256226.1 mRNA upstream 52004 12431919 ~ 12436577 (+) False LOC122357045
XM_043256225.1 mRNA upstream 52004 12432950 ~ 12436577 (+) True LOC122357045
XM_043254685.1 mRNA upstream 59457 12423676 ~ 12429124 (+) True dcdc2b
XM_043255045.1 mRNA downstream 8646 12502385 ~ 12535071 (+) True jag2a
XM_043255046.1 mRNA downstream 8646 12502385 ~ 12535071 (+) False jag2a
XM_043255091.1 mRNA downstream 63404 12557143 ~ 12559518 (+) False cfl1l
XM_043255090.1 mRNA downstream 63409 12557148 ~ 12559518 (+) True cfl1l
XM_043255084.1 mRNA downstream 93147 12586886 ~ 12588331 (+) False mgme1
TU137630 other upstream 883729 11603697 ~ 11604852 (+) True G92977
TU137635 other upstream 884357 11603697 ~ 11604224 (+) False G92977
TU137640 other upstream 910722 11571660 ~ 11577859 (+) False lrrc9
TU137330 other upstream 1270406 11215492 ~ 11218175 (+) True G92772
TU137332 other upstream 1273494 11213526 ~ 11215087 (+) False G92772
TU138047 other downstream 77892 12571631 ~ 12575212 (+) True G93296
XR_006252318.1 other downstream 93147 12586886 ~ 12588853 (+) False mgme1
XR_006252431.1 other downstream 722919 13216658 ~ 13216757 (+) True LOC122357146
TU138522 other downstream 1245868 13739607 ~ 13909603 (+) True G93613
XR_006252357.1 other downstream 1860377 14354116 ~ 14367135 (+) False frmd6

Expression Profile