RNA id: XM_043256388.1


Basic Information

Item Value
RNA id XM_043256388.1
length 9023
RNA type mRNA
GC content 0.52
exon number 43
gene id LOC122357122
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2916892 ~ 2951762 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGGCGAGCTGAACGCATACCTGTTCCACAGGAAGCAGGACAGGACTACACTTAACTATACAACAGGCAGCAAAAACGACTTCAGGCTGGGCAACGATACGTTACCACGGAGAAGAAAACTCCATCCACCCCGGGGGAAAGTCGAGAAGGAGGGGAGGCCCTGCAACACCGGAGCTACCATGGTGGGTGAGCGCCGCAACGGTAACCTGCTGGTTCAGCTGGGCCCGAAGCTGCAGGCTTACCCAGAGGAGCTTATCCGTCAGAGGAGGACTCACGACGGCCAGACGGAGTACCTGATTCGCTGGAGCCTGCTGGCCGTGGACGACAGCAGCAGCTCCGGCTGCAGCAATGAGGCGAGCGGCGGCAGCGGCAGCAGCTCCGGCGTCGGAGGCTCCAGTGGCTCCACCTCAGGAGAGAGCAAGAGCGAGAGCATCCTCATGTGGATGTCCACGGAAGACGTCTACGCCAACTGCCCCACTCTGCTGGGCAAGCGCAAGGCTGACTCCCAGAGGCCTCtgctggaggaagaggagcggCCCAGCGGCCAGTTCCCCGCTGACGTCACCTTCGACGAGGGAGAGCTCCTGGACATGAAAGACGACGTGAAGAATCTCGTGCGACGCGCCCGGAAGCAGATGGCCAAGAACAGCGACTTCGGGATCAGCATCACGCACACCATCCACGTGCTGAGCGCCTACGCCAGCATCGGTTCTCTGGTAGGGGTCTTCAAGGAGACCGGCGCTCTCGACCTGCTCATGGAGCTGCTCTGCAACAAGGAGCGACAGACCAGACGCAGCGCTGGCAAGATGCTGCGAGCCCTGGCTTCTCACGATGCGGGGAGTCGTGCCTATGTGCTGTTGTCCCTCAGCCAGCAGGATGGCATCGAGCAGCACATGGACTTTGACAACAGATACACCCTGCTGGAGCTTTTTGCAGAGACCACCTCCTCCGAGGAGCATGGCATCTCCTTTGAGGGCATCCATCTTCCACAGATTCCAGGCAAGCTGCTTTTCTCTCTGGTGAAGCGTTACCTGTGCGTCACTTCGCTGATGGACAAGCTGAACACGGCGGGGGTGGAGTCCTCCTCTGAGCGTCAGGAGGTTggcccctcctcctcctcctcggcaGCCTACCAATCGGAGCACGCTCGCGTGCAGCGGGAGTTCGAGTTCACCATGGCCATGGCTAACCTCATCTCAGAGCTGGTGCGCGTCATGGGCTGGGACCGTAACCGGCAGCTGCCCCTCAATTCCACAAGCTCCAGCAGAGGGCTTGAGGAGATGAACAATGAAATTCAGAAACACCCCGTCCGGTCCATCTTTCAGCCGCGCTTCTCTGCCGCCGTTTCCTTCATGGCCGCTACAGCAATGGCTGCGGTCACACcaccaaagaagaagaaaacggCTAATGGTTTCAAGACTCGTTCTGACTTCACTTCCCGCTCTGCTTATGTGGAGTATGTGCAGGACAACCTGAAGAGCGGCATGATGGTCCGTATGCTGGAGGACTATGAGGAGGTCAGCGCCGGGGATGAAGGGGAGTTTCGTTACAGTAACGACGGCTCTCCGCCGGTGCAGGTGTACTGGAACTCCCTGTCCAGGACCTACTGGGTGCACTGGCACATGATCGAGATTTTGGGCAACGGCAGCGGAGGACAGGCGGAGAAAGAGACCCAGGAGAAGGCTTCGTCCCTCACAGAGACACTCAAACTCACTACTGTGAGTCAGACGTTCTTCTCGAAGCCCCCCGGTGGGCTGTACACATTGCCTTACTTGATGGAGGGCTCTCAGGATGACGCAGGCACCCTGAGCCGTGCTGAATGGTGGGAAGTGCTGTTTTTCATCAAGAAGCTGGAACCCAAGCAGCAGCAGGAGATCAACGGCATCCTGCGACAGAGCCTCGATGAGCCGATGGTAGAGCTTGACGAGTCGACTCTCATCCAGCTGTCCCTCTCGAGTGAAGTAGCACGGAAAGTCCTCCACTACCTGAAACAGAGCTTGCAGGCGTCTTGTTTGGGAGACCTGCTCTGCTCACACACCTTCATCAAGCACTACCTGAACTGTGGCGGCGCTGGCCTCGAGGATGAGGAAATGCTGATGGGCAGCTCGATCGGAGGACAAGGAGCTTCGTCCTCTTCGTCGCTGTCCTCCGCCACAGCATCGTCCTCTTCCTCGGCTTCTTCCTGCACCATGGGCTCCGTGTCCAAGAAAGCCAAGAAGGAGATCCCAGCAGACACGGGCAGCTGTGGCAGCGAGACAGAGAGTGAACTTCCCACCGAGGATGACACAAAGTATCCTGATGACCTGGAGGAGAAGATGAAAGTGTTCAACAGTCCGAAGGTGCAGGGTAAGAAGAGCTCGCTGGAGAAGATGGGGGAGGTGGTGGACATCATGAAGAAGAGCAGCTCAGACTCGGGACTGCAGCTGGCCGGCATGAAGGTCATCGGAAAGATCCTGGAGGAGGAGGGACCTCAAGAGAGGAGCACCCTCAGATCAGACTCGGCGCAAACCATCCGCGACAAAGCCTTAAAGATGCTGGTGGAGATGATTGGCAGTCAGCCCAAGCAGAACGCTGTCACCGCGCTGCTGCTGACCCGCAGTCTAATGCTGAAATATGAGTGGAGGGTCTCATTCGCCACCGAGGGGGGTGTTAAGGCCATCCTGTGCTGCATGCAGGAGTATCCTGTCTGTATACAGGTGCAGCAGATCGCACTGGCGACTCTGAAGGTCATCACGGGTGCCAGTAAACACGACCCTCGCAGTGTGGGTGGCTGTCTGCCCCTTTCTGAGTCTGGCACTCAGATGATGCTGGAGATTTTTGCGAGCATAGGCTCCGCTACACCCGAAGGCTCCAAAGGGCTCCTGTGTACCATCCCTTCTGCCATCGACCTCATGCTCAGCACGACGGGTTGCGGTCTATCCGTGCGGAACGGGCTGCTGGTCATCATCATGCTGATTTCCAGCCACAAGAGCCTGGCAGAGCAGCTAGTCGCCTGCAATGTCAGTGCCACGCTAAAGAAGTGCCTTTCTGCTCAGAATCAACACAGCATGCTGGCTATTATCGCCCTCAACCACATCTCCATGGTTCACAAACTGGAGAAAAAAGAGTCTCAAGATGAGCATGACTTTAAGGACACAGAGCTGAAGATGTTGGTGGTGAGTCTGAAGGAAATGCCAGCCACTAAAGAGGTTATACTGACTCTGGAGCAGCTGCTCTGTGACGACGCCTCCCagctggaggaagagaggaacGAGGTAACGCGCAGCAGAGACACCTTCCAGGACCTCATCCGCCTCATGGACCAGCACAGAGTGGATCGGGCGGTGCAGCTGTCCATCCTGAGgattttaaacaagtttttgGATAACTACCAGGAAGACCTGTTGCCGTGGCACGAGAGTATTGAGCCTTGCCTGTCGTCTATGACGGCGTTTGTCAGTGACCGGGAGGTCGTACAGCAGTTTATCCGCTTCTTATATCGACTTGCATCTCTGAATAAAGACTATGCCGTTGTGATGTGTCGGCTGGGCACCAAAGAGGCTCTTATCAAAGCCGTGGACAAACACAGCACCAGCTTGCTGATGGTCACAGAGCTGCGGGATCTGATCAACGACTGTGAGAAGTACGCTAGCCTCTACAAGAAAATGACCACCAGTGTTCTGGCTGGATGCATACAGATGGTGCTCGGTCAGATTGAAGAGCATCGTCGCAGCCATCAGCCCATTAATATTCCTTTCTTTGACGTGTTCCTGCGCAACTTGTGTCAAGGCTCCAGTGTGGAACTGAAAGAGGACAAATGCTGGGAGAAGGTGGAGGTTTCCTCCAATCACCATCGAGCTAACAAGCTGACAGACAAAAACCCAAAAACCTACTGGGAATCCAACGGCTGTACCGGCTCCCATTTTATcaacatttacatgcataaaGGGGTGATCATCAGGCAGCTGACTGTGCTTGTAGCCAGTGAGGACTCGAGTTACATGCCAGCTCGCATTGTAGTCCTAGGAGGAGACGATCCCACAAACATCAATACTGAACTCAACACTGTAAACGTGGCCCCCTCCGCCAGTCATGTGGTTTTGCTGGAGAACATGACCCGCTTCTGGCCTATCATTCAGATCAGAGTCAAAAGATGTCAACAGGGTGGCATTGACACACGAGTGCATGGGTTTGAGGTCCTGGGGCCGAAGCCTACGTTCTGGCCTGTGTTTAAGGAGCAGCTGTGCTGCCGTACTTATCTCTTCTATACGACAAAAGCTCACACCTGGTGCCAGGAGATCCTGGAGGACAAGAACCAGCTGCTGCAGCTCTTTAACAAGTTAAACAGCGCCCTGAAGCATGAACAGATGTTTGCTGACCGTTTTCTGCCTGACGCCGAGGCTGCAGAGGCTTTAGGGCGGACCTGCTGGGAAGCTCTCATCACCCCCATCGTGCAGAGCATCACTATCTCAGAGACATCGACTCTCAGCCCTCTGTCATGGCTGATGAACGAATATTTGGAGAACACTGAATCCTCCAAGAGATGTAAGAGCTCAGCCTCCACCTTCAACTCGCGTGTGCGGCGTCTCACTCATTTGCTTGTCCACGTGGACACCAGCACAGTCGATACAGAAGAGCTCAAACCTCCCATCAAATCCAaagGTATCAACAGAAGCAGAGATTTGAAGAatggTAAAGAGGGCAAGAATAAGGAAACGACGGCAGTGAGCTCATCTTCATCCTCAGGCAAACCAAAAGTGAAGAATACAAGCAGCATCGCAGGCATTGCTTTGTGCTGGCAGGGTGTCGTTCAGCGACAGGTAAAGAGTTTCCTGGATTTGACTTGCAGCCTCCCTGACTTCGTAGAGCGCTACAGGGGTCTGTTCCTCCGGCTAAAAAATGCCATGGAGGAACTTTTTGGTCAACACACTGCCTTTGTGCTTGCCCTCCGTCAGGGCTTCTCCGCCGCCTTGCTCCAGCTCTCCATCCTGACCGCTATGCATGTGAGCGAACGTTTTGCACAGTACATAGACAAGATGATCCAGGAAAGTGGAGTGGACTCTGGAAATGTGGACACCTTGAACCAGCTGCAGCAGTTCCTGGAGCCCATGCTGTTTCTCTCGGGTCTGGAGCTGGCCAACACCTTTGAGCACTTTTACAGGTACTATCTGGGAGATCGGCTGCTGGGTCAAGGGAAGGTGTGGTTAGAAAGCGCTGTGGTGGAGCAGATCGGTACCTGCTTCCCGAACCGGTTTCCCCAGCAGATGCTGACCAACCTCAGTGAATCTGAGGAGCTTCAACAGGAGTTTCATCTTTACCGCCTACAGCAACTGGACAAAAACCTGGAGGACTTTGAGGAGATGATGGATGAGGACGTGTCTGAACTCGAGGAAGAGAGTGACGTGAAAGTGTTGGTGTTGTCCCCGCGCTGCTGGGTTGTGTCTGCTCCCTGCTACCTCGAGGACCCCAGCAAACACTTCCCTGCCCAACTCTGCACTTACCTGGCCGAATTCACAGACTTTTACGCCAACGGTCAGCGCATGTATAGTTTGACTCACAGTAAGCCTCGGCGGCTGCAGTGGACGTGGCTCGGACACGCAGAGCTTCAGTATGGCTCCTCTACTCTCTACGTCTCCACGCTGCAGATGTACATCTTGCTTCAGTTCAACAAACATGAGGACGTGAACGTGGAGATGTTGCAGCAGGCCACGGGTCTCTCTCCAGCCATGATGAGCCATGCCCTCAAACCTCTCACTGCAGAGAAAGGGGTTCTCACTCACACCGGCTCCAGCCAGGACCCCATGAAAGgGGTCCTGAGACTGAACAAGAAGACGCTCTCACAGAGCTCAGAACGACACGGTTACCATTTCCTGCTTCCCAAGCAGACCTACCTGAATGTGGATGAAGATGCTGCGCTCACGCtagagaggaagaggaactACATCTACTGTCTCATTGTGCAGATCATGAAGAATGAGAAGGAGATGCATATAGACAATTTAGTGTTTATGGTGTTGGACCGGTGTCAGAAGCAGGAGGGCAGTCGGACTCACCCCTCGGTCCGCTTCAGCTGCAGCACTACAGACGTGCTCTCCTGCATCATGCACGTCATCAACAAAGGCTACCTCCGCCGCAACGAGGAAAGCCCGCACATCGTGGAGTTCTTGATGGAGGACCCGTCCACTCCCCGCAAGGGCCAGGCGCAGTTCTCCTTTAAGATGGACGTGAAAAAAAGCTCAGCGagcagcagcggcggcggcAAGGCCGACACCAGCCTGGGAGGCCTAATAGTTCCCCCGCAGCATCCGGAGGACGGCGTGCTGGAGGCCGTGCTGTTCTCCATGGGTCGCACAATGACCCAGGAGGAGGTCAAGCAGCTGATGCAGCGCACCGTCCAGCAGGTGGCGGGGACCCTGAGCCTGGATCTGGACCGGGCCGAGCACCTGCTCATTCACTGCAAATGGAACGTGGATCTGTTGATCCAGCGCTACACGGACGACCCAGATGCCCTGGTGCTGGCTGCCGGCCTTAAGATCCGCAACCCCCAGCCGGCCCCCGTCCCCGTGGCCCACTGTCCCGTCTGCCTCTCCCAGTCCAAAGAGAGTGACCCCCCTCCCATGCTCTGCTGCATGCACTACTGCTGCAGGTCCTGCTGGCAGGAGTACCTCACCGCTCGTATCGAACAGAATCTGGTGATGAACTGCGACTGTCCGATCACAGACTGTCGGGCTCAGCCCACTTCCAAGTTCTTTCACAACATCCTCACAGATAAGGACACCATTGCCAAATGTACGTACAGGTCAGCACTCTCACGCTCGGTTATGTGGCGCCCTTCTGCGGGCTTCGTGGAGTGCTGCTCCAACCTGACCTGGTGCACCAACCCTCAGGGCTGTGACCAGATCCTGTGCAAGGAGAACATTGGCAGCATGGGCACCTGCTCCAAATGCTGCTGGTCTTCCTGTTTCAGCTGCAACTTCCCAGAGGCACATTACCCAGCCAGCTGCAGTCACATGTCTCAGTGGATGGATGATGGAGGCTACTATGAGGGAATGAGTATGGAAGCCCAGAGTAAACATCTGGCCAAACTTATATCCAAACGCTGCCCCAGCTGTCAGGCCCAGATTGAGAAGAACGAGGGTTGCCTACAtATGACGTGTGCCAAATGTAATCATGGATTTTGCTGGAGGTGTCTGAAACCATGGAAGCCAACGCATAAAGATTATTACAACTGCTCAGCCATGGTCAGTAAAGCTGCAAGGCAAGAGAAGAAGTTCCAGGACTACAATGAGAGATGCACATTTCATAACCAAGCCAAGGACTTTGCAATCAATCTGGAGAATAAGGTGTTTTCTATTAATGAAGCTTTACAGATGAAGTCTTTGACGTTTGTGATCGACGCCTGCAAGATTCTTGCCCAAGCTCGAAAGGTGCTGGCATACTCGTGTGTTTACAGCTATTACAACCAGGACACCGAGAAGATGGACGTGATGGAGCAACAGACGGAGGCTCTGGACCTTCACACTAACGCCCTGCAGATCCTGCTTGAGGAGACGCTGCTGCAGTGCACTGATCTCGCATCCTGCGTCCGACTCCTAAAACCCGAACACCTAAACACCGGCCTGGAGCTCATTCGCCGAATCCAGGAGCGTCTTGTGGCCATCCTCCAGCACTCCACTCAGGACTTCCGTGTAGGATATCAGTCCAAGACTGGGCCAGACCAGGAGACCGCACAAGCTTCTAATCTAGCTAACCACACAGACACCAACAAAGAgtccAAGTCTGATGGAGGCTCTGACTCTGGAGACTCCGACAACAACAACTGCGCCGGCGAGGACCCCGGCGATGAAGCAGAGGAGGACGACGAGTATGACGACGAATACGTTCCAGAATGGCACGAGGATTACGATGAGGAAGATATAGACGACGACGACTTTTTTTCTGACGACGACGAATCTGAAAACTTAGAGAGGGACTTCAGCCCTTTCGACTAAACGAGCCCGAGAGCGATACACAATGCTTACACGATGCCTACCGATGTGAAAGTAGACACTACAAATTCCACACCCAtataagaacaaaaagaaaaaaagatatggGAATCCAGAATTCGGAGTAAGTTTTTCTGTAACGTGGTTTTTGCTTCGCACTTAGCACCTACTTTGAGCCCTAGCGTAAATTCGTCGTTACACCAAAAGTGGTATTTCacgtttatttagatttatgcTACAGTTTCATTAACTTCCGAAATTGTAAATTTGTTCTTGGCTGATGAAGGTACTTTAAGTTCAATGAAGGATCTTAATTATTCATGTTATATTGtagaagtattatttttttgaaacagtTTTGTTAACAAATTAGAATTATTTGGTCAAAATTTGAAAAAGAAGGGATGCGTAAACAttagaaaagtttttttgttttttttgtttttttttatctggtcGAAGGTGTCGGCATTgtgtatttagtttaaatacCAAAAGCACTTGCctttattccattttaaattcCTTTAAATGCCTTCATATGTATGACGTTAAGTTGGTTGATCGCCATTCGAATGATTGTAagcatttggaaatatttgcaGAGATcttgaaaagagaaaaacatcagcATCCGTGTTTAAGGGCTGCATGAAAAATGACTAGTCCGTGATGAGGATGGTGCTTCAATGACCTGCTGGTTGTGTCAGGCACCGGAATCCTACAAACTCCAACGTTTTACTTTAGCCCGTCTCATTAAGATGCAAtggcaataaatatttaaaagtattgtaGCTCGTCGCATTATTTGCTAAGCAAAACATACCTTAATCGCTTTCAGTTtcttcctcaaaaaaaaaaaagttttaattctttttttggacatttatgTTCACTTGTATAGAGATGGAGATATAAAATATCTTCCGAAGTCCAGTTTTGAATTGAGATAcctatatattcatatactgtccatcttctgaaatgttttctctGTTCAACTTAAAAAGGAAGTTGCTCAACTTCAGctcacaaaataaatgcttttcttcaaA

Function

GO: NA

KEGG:

id description
K11970 CUL9, PARC; cullin 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252297.1 lncRNA upstream 35206 2865807 ~ 2881686 (+) True LOC122356240
TU133668 lncRNA upstream 287285 2629192 ~ 2629607 (+) True G90292
TU133666 lncRNA upstream 291609 2624938 ~ 2625283 (+) True G90290
TU133578 lncRNA upstream 435117 2481369 ~ 2481775 (+) True G90232
TU133576 lncRNA upstream 435248 2481369 ~ 2481644 (+) False G90232
TU133785 lncRNA downstream 30981 2982743 ~ 3010641 (+) False LOC122356072
TU133791 lncRNA downstream 65032 3016794 ~ 3017220 (+) True G90339
XR_006252271.1 lncRNA downstream 68306 3020068 ~ 3020891 (+) True LOC122356074
TU133809 lncRNA downstream 100220 3051982 ~ 3278260 (+) False LOC122356070
TU133743 lncRNA downstream 248085 3199847 ~ 3201487 (+) True G90326
XM_043254766.1 mRNA upstream 56225 2852563 ~ 2860667 (+) True LOC122356236
XM_043255905.1 mRNA upstream 70632 2839850 ~ 2846260 (+) True ppm1g
XM_043254713.1 mRNA upstream 414571 2500682 ~ 2502321 (+) True LOC122356205
XM_043255327.1 mRNA upstream 428757 2482202 ~ 2488135 (+) True polh
XM_043256327.1 mRNA upstream 438043 2477593 ~ 2478849 (+) True tmem14a
XM_043255830.1 mRNA downstream 5896 2957658 ~ 2971147 (+) True LOC122356776
XM_043254845.1 mRNA downstream 19384 2971146 ~ 2979249 (+) True LOC122356304
XM_043254525.1 mRNA downstream 30941 2982703 ~ 2994788 (+) True LOC122356072
XM_043254519.1 mRNA downstream 70854 3022616 ~ 3050667 (+) True LOC122356067
XM_043254522.1 mRNA downstream 101744 3053506 ~ 3055298 (+) True LOC122356070
TU133574 other upstream 446511 2469945 ~ 2470381 (+) True G90230
TU133396 other upstream 736153 2176153 ~ 2180739 (+) False cutc
XR_006252324.1 other upstream 750864 2153422 ~ 2166028 (+) True tp53bp2a
TU133255 other upstream 1044301 1872184 ~ 1872591 (+) True G90010
TU133244 other upstream 1074784 1840335 ~ 1842108 (+) False mpc1
TU133786 other downstream 30797 2982559 ~ 2984609 (+) False LOC122356072
TU133784 other downstream 30981 2982743 ~ 2984609 (+) False LOC122356072
TU133808 other downstream 100220 3051982 ~ 3055118 (+) False LOC122356070
TU133807 other downstream 101812 3053574 ~ 3055118 (+) False LOC122356070
TU133814 other downstream 222973 3174735 ~ 3285406 (+) True G90350

Expression Profile