RNA id: XM_043256409.1


Basic Information

Item Value
RNA id XM_043256409.1
length 3479
RNA type mRNA
GC content 0.45
exon number 13
gene id phactr2
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8744844 ~ 8778565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGACTGGCTCAGTCAGCTCACTTTAATGGAGGTAATGGCTGTTTGTCATCCTCAAGCCTTCGCCGCTCTTCCTGCCGTGCACCACTGCAGAGAAGAAGGCTGCGAGAGCACCACAGGaagtgaggagagagagagacagagtgagtgagtgagagagagtcagagagagagagagagagggagagagggaatcagaaagaaagagtgagaaagGAAACTGAGGACCATCTCACTGGagcagctgattttttttttttatccttccAGTCATGGAACATGCCTTGGAGGGACTGGAAAAATCTTCTCTGGCCAACTGTGATGTGGTGGTGGGAAGCTCGCAGTCTCCTCAGCTGAAAGGAAAGGGGAAGCTCTCTTCTCTCGGCAAGATCTTTAAACCTTGGAAATGGAGAAAGAAGAGAACCAGTGATAAGTTCCAGGACCTCTCAAAAGTTCTGGAGAGGAAAATATCAACCAGGCAAACTCGAGAAGAGCTCATAAGAAAAGGCGTCCTTATTCCAGACCAAGATGATCCTTTGAACACTGAGACTTTGAATGGCCATGCAGTGCCCAGTGGAGTTACTGAAAAGGTCAAAGTAGACATTGAAACACCAGAACGGGTCCCCGAAGAGAAACCAGACTTGGCAGCAGTGGCAGAGGACCCAGAAGAGAGAAAGGACAGCAAATGCAGCCCGCAGGCCAGTGAGTCAGCCGCTTCAAAAACCCCTACTAAAAAACATCAGGCCACAGTCCAAAAGCCCTCCAGTGAGGCCGCAAGCACTGCCGTGAAGAAAGGGGGCCAAGCAGGGGGTAAAAAGGTAACCAAGAGCACCAATAAGCAAGTCTCCGCTCCTCCACCCAAACAAACCACACGAACTGCCGCTCGTGGCAATGCTAAGCCTTCGAATCCTAAGAAAACTGCAGGCACATCCAAGAGTTCCTCTCAGGCCTCAGGACAATCTTCTTTATTGACCAGCTCAAAGACCCCAAAGAACAACAGCTTAGAAGCGCAACCCAAGTCTGCCAAGAAAAACGAACCTTCCAGGTCACCACGGCCCTCTTCCAAAATCTCGTCAGAGACCACGGAAAGCTCTTCTAAAAAggaccaaaagaaaaaagaagtgaCCTCCAATATTGAGAAGGCTGAGGAGACATCTCAGAATGGGAAGGGTGCCAGTCGTCTCTCGGAGTCGTCTGCAGAGAAGGACAAAAAGCAACCTTATGTTAATCAAACCACAGAGGAAACGTCCTTCGCTGGATCTTCAAATGGACTTCCTTTGGACACTTTAGGGCAGCCTGTGAGCGCAGAGAGTGTAACGGAGAAAGAGAGGGCAGTGGCAGACCAGACACAGAGGGTTGTTGGGACCGATGAGGGAGAGAGACAACAAACTGTCAATGTGGAAAATCCAGATGTGACCGTCATTCCTGACTCCGTTCGAGAAAATCAGGCCAACGACTCCGATTCAGATGGACCTATACTCTACAAggatgatgaagaggaagatgaggatgatgagtATACCTCTAgctcACTTGCCAGCAAAATTCGCCGTAAGGACACACTTGCCATCAAACTTGGTAACAGGCCCAGCAAGAAGGAGCTAGAAGAGAAGAACATTCTCCCACGGACCTCAGAAACGGAGCGACAGGAGCTACGGCAGCAGATCGGCTGTAAACTAGTGAGACGACTGAGCCAAAGGCCCACCACAGAAGAGCTTGAACAGAGAAATATTCTGAAACAGAAAAATGAGGAAGAAGAACAAGAGGCCAAGCAGGAGATTAAAAGAAGGCTATCCCGAAAGCTCAGCGTCCGGCCCACTGTTGCAGAGCTGGTGGCACGTAGAATTTTGCGCTTTAATGAATATGTGGAGGTCACAGATGCAAAAGACTATGATCGGCGTGCTGACAAGCCCTGGACCAGGTTAACCCCTGCAGACAAAGCTGCTATACGTAAAGAACTTAACgaatttaaaagcaaagaaatgGAAGTCCATGAAGAAAGCAAACAGTTTACCAGGTTTCATCGGCCCTGAGTCGGTGCCTGGTCGTGGGGGTGCTGGACGGCCGCTAAGTCGAagctctctcttcctgtctcttcGCCCATGCTTCCTGCCGGGAGACTAACAGACTGGCTCCCTGCGGCAGCCGGCTCTTCTCTGGCACCGGCTGCACTTTGGTTCTTGCTTTCGGCCACTAGAGGGCTACAGTGCAGTTGAAGAGAGTCCTGGGATGCCATCGCGAACTGAAACTGAAAGAGAGGAACCTTCAAACAAGAAAAAGCAATGCAATGTTTGAGACACGtggtttttttgttcatatctGTAATGTTTTTGCACACACTAAGGACAAGACTTGCactcttttaatttaaagtgtcCCTGATATTCTCTCAAGGTTGAGCACAGCAGTGTGAAAACATTGAAGCGCGTGCAGTGACTCATCAGTGGCTCGCATTGTTGCTGCGTGCGGCTCCAAGGattttttgtgtctgttttattttgtacatattacatatttcttGCAGTATTCGAGCAGAGTCCAGTAATATCTATGAATATCCGTGCATGTGGGGAAAAAACCATTTTATAAGACTCGTGTATCTGGTCCAGTGTATATTACATGGATATTGAGGTGTATTTGGACAACGTGATGTCCAGATTTATTACTGCCATTATTCCTCTGTATCCAGATCAATACGTCCTCGATATAATAGAATGTAATCAGATTTATGTTGTGCCTTgacagtgttgttttatttcccccccaaaaaaagtctGATTACTTGATATATATGTGGTCATATTGTAACATATCTGTAACTGCTGTTCAGGAAGAGACTCGTCATACGTTTATGGAACAACTCGTGTTTATTTGCCTTGTATTTTAGTTTACCCTGACATTATTTCCCAAAGTTCCAGTTAGCATCTCACTCATTTGGCTTTTAGGTTGTGCATAAATTTGGTGGGTTTTATTGAGTACAGTGGTGTAGACCAGGTAAAAGATGTGGTAagcaatatataatgtaaaccgGTAGTTTTAACTTAAATCAGAAAGGGCTTCTAGTCCGTTATTTTAGTCCATTATAGAATGTGTCTGTATTGCATTGTTGCACATTTTGGTgctctatataatatatgattGTATGTCACAGGCAGAACGTGCTGGACGCTACCTCATGTCCGGCTTCTTGTCCATGTAGTTAGAAATTGGggaaatttaaattatttcaaattaattgtaCAGTCTGTATATGATATATGTGAATACATCTAGGATATTGCAGTATATTGGCTTGATTTGCTTCTCATTTAAAGATGGTGAAAACATTAACTTGGATTTATcatctgtgttttgtttagttatttaggTTAGCAAACGTACATAAGAGAAACCACCTCAGTCACCActggactatatatatatatatatatatgtatgcagtTTACACtgctatttaataaaaaaaagacatatcaATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136475 lncRNA downstream 4755 8738975 ~ 8740089 (-) True G92195
TU136251 lncRNA downstream 66458 8667496 ~ 8678386 (-) True G92021
XR_006252360.1 lncRNA downstream 67587 8675587 ~ 8677257 (-) True LOC122356657
XR_006252359.1 lncRNA downstream 69308 8669235 ~ 8675536 (-) True LOC122356656
TU136224 lncRNA downstream 152270 8591358 ~ 8592574 (-) True G92004
TU136496 lncRNA upstream 25638 8796871 ~ 8803406 (-) True G92205
TU136531 lncRNA upstream 203852 8975085 ~ 8975334 (-) True G92235
TU136557 lncRNA upstream 250577 9021810 ~ 9022207 (-) True G92251
TU136572 lncRNA upstream 336837 9108070 ~ 9108361 (-) True G92263
TU136573 lncRNA upstream 341062 9112295 ~ 9112589 (-) True G92264
XM_043255627.1 mRNA downstream 43719 8683957 ~ 8701125 (-) True rgs17
XM_043255498.1 mRNA downstream 81255 8647454 ~ 8663589 (-) False map3k21
XM_043255497.1 mRNA downstream 81255 8647454 ~ 8663589 (-) True map3k21
XM_043256396.1 mRNA downstream 104837 8585581 ~ 8640007 (-) True prim2
XM_043254913.1 mRNA downstream 250872 8480892 ~ 8493972 (-) False si:dkey-103j14.5
XM_043256405.1 mRNA upstream 11765 8782998 ~ 8790869 (-) True cog2
XM_043254819.1 mRNA upstream 38218 8809451 ~ 8874001 (-) True galnt2
XM_043254820.1 mRNA upstream 38218 8809451 ~ 8874000 (-) False galnt2
XM_043254957.1 mRNA upstream 107288 8878521 ~ 8892805 (-) True urb2
XM_043254973.1 mRNA upstream 137582 8908815 ~ 8917062 (-) False rab4a
TU135889 other downstream 696943 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 1609702 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 1613629 7131145 ~ 7131215 (-) True trnag-gcc_67
TU135441 other downstream 2354129 6358201 ~ 6390715 (-) False sdccag8
TU135397 other downstream 2519111 6225261 ~ 6225733 (-) False LOC122356805
TU136576 other upstream 343860 9115093 ~ 9115551 (-) True G92267
TU136940 other upstream 1414528 10185761 ~ 10190510 (-) False LOC122356841
TU137394 other upstream 2153711 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 2429713 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 2754947 11526180 ~ 11531309 (-) False zdhhc16a

Expression Profile