RNA id: XM_043256414.1


Basic Information

Item Value
RNA id XM_043256414.1
length 1663
RNA type mRNA
GC content 0.40
exon number 8
gene id ccdc172
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 7365522 ~ 7471201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCAACTATTCACAAATGCGCAGAGAGCTAATACGCGTGTCAAAAATCAAATGCACAGGACGCGATTTACATATAAATGGCGGGCAAAGTGTTTTttagtagaagaaaaaaaaagttttttatttTTAAAATTGCCATCAAAAGTGTACAGGACAAAATAAACTGCTCACGTGAAAAACTGGAGGAAGCACATCGTGAACTGGATGAGAAGGCTCAGCTCCTGGCTGAAACACAACTGCAGTTTGCATTGATGACTAAGCGACAAGATCAGCTGGAAAGGCATAAAGAGGAACTCCTCGGACTGCAGAGAGATCTCAAAGAAAACCTGgACAGGCTGAAAAGAGAATCccgagaagaaagagagaaattcTTGAAGGAGATGATAACTTTCAACAATGAATTCAACCTAATTAAccacagaaatgctgtttttcacaCCCAAGCCCTATCTAAAATCCAGAGCTTGGAGCTGGAAGCTGAAACTCTACACAAAGAGATGGACTTGCTGAAGCAAAAGAACACTTTGCTAAGCTCCATGGAGGCAGAGAAGATATCACTAGAAGCCGAGCTCCAGGATATACAATCACAGCTTACAGATGCAGAGAAAGCACTGAAGGAAGCAGTGGCTCTGACAGAGAGCTTGAAGACAGAGAGGCTCATGGTCCGTCAGAAACCCTTGACAGACAGCACCTGTATTAGACTCAAGAAAGAGCTGGAGTTGTACAGAGAAGAAGAGCTTGAGCTTCTGCGAGAGACCATCAGCTCTGAGATTCGCTCCCTGCAGCTGAAACTATCACAGAAGGGAACTTTGTGTTGAGAGTGCTTCAGTAACCCTGTGTTTTGTTGGCTTATATTACCGTCACTTATATTTTGCCTTGAAATGATTCAATTTAGTTGGTAACAGACTTCATGTACAGTTTAAATAGTATTGTAACAACTATAGTTTAGATCTTGCTAAAAAGTTTAACTAAACTAGCTCTTTCTAGAGTAGAAATGTCCTTGTCGTTAGATGCCTGTCTTTATCTCAGGCAAGGCACTGATTCTATATTATACGTTCACTTTGCAGTTTTGTCAAAAACGCTGATAACACTGACATCTAGTGGTTCTGTTGCATCTGTACATCGCAAAGAGAACATTTAAATGAGCTTGTATCTATGCTTACAAATAGACTAAATTGTGTTCATGTAATTCCCCAAAATAGGCTGCTGCTTTGTTATTAAATACGTCATTAAACGTTTGGTACAAAAATGGAAATTGGCTATTTTGGCTGTATAAAGAAAATCACACTTGATTTCTCAGCGTGGTGGCAATGTTGCACATTAAGcaattgtgtttaaaatgaacagGGACAGAATCATTGACCTCAGGCTATGATTGGTAAGACTGGATGACTGGTGCACATCTGCCATTAAGCTGATCTGTCTGATTCCTGTCTCCGCCATAGACCCCAATGGGAAGATTACTCCCGCCACGGAAATTAAATCCTCTGAAGCTCTCTTAGTAATAGCTGCTTTATTTCTCAATTGTCTGagcaaatttaaatgtatactgtaaaaTCGCTTAGAGAAACATGACTAATGTCTGCAGATTTTGTAAATCTCTTCCCCAGCAATTAGAACCGCTAATACTTTGAATAAAACGATAAATaggctgaaataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135665 lncRNA upstream 218304 7096154 ~ 7147218 (+) False LOC122356719
TU135661 lncRNA upstream 262000 7096154 ~ 7103522 (+) False LOC122356719
TU135660 lncRNA upstream 262522 7096154 ~ 7103000 (+) True LOC122356719
TU135663 lncRNA upstream 262522 7102167 ~ 7103000 (+) False LOC122356719
TU135662 lncRNA upstream 262934 7096154 ~ 7102588 (+) False LOC122356719
TU135739 lncRNA downstream 411345 7783640 ~ 7787307 (+) False sh2d4ba
TU135745 lncRNA downstream 437576 7809871 ~ 7810104 (+) True G91673
TU135763 lncRNA downstream 450987 7823282 ~ 7825341 (+) True G91681
XR_006252393.1 lncRNA downstream 736046 8108341 ~ 8111278 (+) True LOC122356873
TU135927 lncRNA downstream 820031 8192326 ~ 8194318 (+) True G91809
XM_043255880.1 mRNA upstream 72214 7108678 ~ 7293308 (+) True atrnl1a
XM_043255727.1 mRNA upstream 267594 7093144 ~ 7097928 (+) False LOC122356719
XM_043255726.1 mRNA upstream 267594 7093350 ~ 7097928 (+) False LOC122356719
XM_043254684.1 mRNA upstream 469819 6890513 ~ 6895703 (+) True emx2
XM_043256270.1 mRNA downstream 105739 7478034 ~ 7721812 (+) True LOC122357079
XM_043256272.1 mRNA downstream 105739 7478034 ~ 7721812 (+) False LOC122357079
XM_043256271.1 mRNA downstream 105739 7478034 ~ 7721812 (+) False LOC122357079
XM_043255336.1 mRNA downstream 399265 7771560 ~ 7785341 (+) True sh2d4ba
XM_043255335.1 mRNA downstream 399265 7771560 ~ 7785341 (+) False sh2d4ba
unassigned_transcript_1926 other upstream 234026 7131426 ~ 7131496 (+) True trnag-gcc_68
TU134595 other upstream 2367626 4992327 ~ 4997896 (+) False si:ch73-49p17.1
TU134239 other upstream 3121481 4182499 ~ 4244041 (+) False G90660
TU135767 other downstream 463895 7836190 ~ 7838941 (+) False chchd1
XR_006252298.1 other downstream 486403 7858698 ~ 7881483 (+) False zswim8
TU135961 other downstream 934191 8306486 ~ 8310824 (+) True G91833
XR_006252358.1 other downstream 1293973 8666268 ~ 8683052 (+) False pcnx2
TU136262 other downstream 1366778 8739073 ~ 8740089 (+) False sf3b5

Expression Profile