RNA id: XR_006252273.1


Basic Information

Item Value
RNA id XR_006252273.1
length 3650
lncRNA type inter_gene
GC content 0.40
exon number 9
gene id LOC122356093
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15506993 ~ 15532235 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCTCGGTTCGGAGCTCAAGCGGTGACACAGTTTCCACGGAACACTCTGGCGGAAATGTTGTAGAACCAACCCCGACGATGTGCTATCATGATATCTGGTCCTCGCCGTCCATAAACCGTGAGATGcttCTTTTTTACAGTTTCCAAAATTCTGGATCCAGTGACTACATTATTGCAGTGATCTCTTTATGTAAGTGATTTGCATTCTTTATAGGTGTTTGTAAGAGAAGTATTCTGATTTCATTTGTCAGTAGATTGTTATGTTGTATTTGGATGTTGAAGCTTGACTGACtgtctttgatttgattgtCTCCTGATATTTAAAAGGCAATTGCTCATTAAACTCCCATTTTACCTGATGCGCTTTTCTGAACTAATAGAATGCCAACTAAAAacctattctattctattctattctattctattctgttctgttctgttctgttcctTTCTATTCCCGtagttatttatatactgtagcTGTTATAAtcgtgtatacacacacaggtaTTCCCCTCTTTAATTCTAAATAAGAAGTGTGACTTCCTCTAAATGAAGCATATTATACAGGCCTAAATGTGTTTCTGTCTTCACAGTTTATTAACTCCATATTGAGACAGCACTGTTTAATCACACAAAATCTGTTCGTGAAATTGTCACGTTTTTTTGCTGAATACAAAAGACGGCATTGAATCTTAGAAATGAATGTGCTATTATAGTGTCTCAGCAGATATGACAGCTTCTTTTGTAGAGCATCCAAACACTTCCATCCCATCACAATGCACAtgcaaagaagacagaggaagcCAATTCATCCGAGCGCCTGGTAATCGGTGATGCCGCTGTTCATTTGTCTCAAGTGTCATGTGTAGGACCACATTCTGGCACAAGCAGatgcttttcattttgttacatttcacGTTGAACTGTGCACATTTGCTCTCTCAGGCTCCTTTTCGGTGGTAAACTTTACAAGACTagaaacaaaatgtgttttatgagggTCTTTATTAAGTCATCGATTATCAGTCACATGCTGGGTTGTACAACAagacttaaatgttttaaaacaagacTTGTATATTGGTTTGCAGGTTGTGTCTCCAAACCTGATTGAATggggttttggaacagagcagCTTAAACCAGATAAGACCAGCAAATGAAATTAGTATAAACTGCTTTTTATCTAGAGATAGAAATTGGTTTAAAAAGAAGAGATAAAGAATAGTTAGGAGatgatttgtaaaatgttaagGAACTGGAATGTCCCCAAAACAATTTATGTGTGTACTTTCCAGTAGTTGCGATATTTTATTTGATGCCACTTTAAGAGAGACTCACCAAAGGATGCTAAGTgaatggcagtgaatgggtgccattgGAATTGGAGACCAAACAGGggataaaaaaacagaacaataatGCACAAGAAATAAATCCAGTCAGTCGAACAACTTCTTGTGACTTTAAATCAGGCCTTTTGACCAAAATACGAGTCCATAATCCAcaataatgcttcctccagaAAAATCTCTGTTGTCATTTCACTTAAAAATCTACAGGCATATTTGTTTATAACGTTTTTTGCTTGATCTGTCCATATTATTCTCTTGATTCAGATGACTTTGACTGGATGACTGGAGCCAGGCATTAACCGATGGACCGGAGTTGTGTGAaaactcattctgacggcacccatccactgcaggCTATCCACTGATGAGCGagtaatgtaatgcaaaatttctccatatatgttctgatgaagaaataaacccATCTACATATTGCTTGCTCTGAGGGcgagaaatgtatttaatatacagttCAGCATTAAAGTTGTTATACTTGTTTACAAGCATATGTGTGCCCATGCATGTTGGTTTGCACCCTGAAATGTCCTTGgcatttactctctctctctctctctttctctcgccgAGTGTCTCTGAATCAGCAGGGATGAGGCCGTGGGTCTCTCACGTGACCGTGCTGCAGGACAGAGCTGGAGGTGGAAGCCAGGCTGTCTGGACAGTGGCTGAAATCTGATGACAGCCGCTGAGAGCAGTAAAAAGCGACTGAGGCTGCTGTTGAATTGGAGTGTGGATGGTGATGACATTGCATATCAATTACCGACCAACACTTTCATCCGTCTctgtttgggtTTACAGCACTTGGCAACACGCATGGAGAATGTCCCACTCCAACAGACACCTGATACGGGAATGAGAGCTGTCAATCACCTGTCTGCATATAAACTACCTGAGCTCGGAGATATGATGCTGCGCTGAGTGAAATAATGATGCAAAAGGACCGTCGAGTTCCCTGACACGAAGCCTAGAAAGGGGCTTCTTCGTTCATAtccaaaaatgatcattttgatGGATAAAGATTGGAAACACAACATTTATCTGAAGTTAAACCTTCTACCTGACAGGAAGTGCATGCTTCCATCCGCTGCTGTACTGAATGAAGGTCAAACTTGTTACCTAAGTTCTTCCACGATCAGAGGATAAAGTTACGAGCCGATATATCTGGAAGCTGTGGCGCAGGCCTCGGAATGGACCCGTGGAACAGTTAAAGGGCTGACTGCAGCCTGCCATCTGTGCACAACCAGAAGCGTGAGCTCTCCAGAGATCAGAGCCAGACGGTGGAAACCACAGCAGCAGCGAAGCAGGACTGAATGTGTCCAATCTGTTGAGCTTTCACTCTGAGATGATGAACTAGACGACACGATTAAATCGCTGTCAACTACACGTCCAGGCCAGCCAGCAGTCAGCCGGCACAAGAGAGCCATACACTGACGGAGGTCCAGCTCAAGACTGATggattcaaaagcatcagtgtGATTCATGTGAACATTacgaaaaagaaagaaatttaatCTCATATACACGTCAGTCGTTGTATAAATACATAGCCCTGCACCTTGTGAAAGATTTCTGTTGATTTGAAAAAAGGGCTAATATTGCCAAATTTTTCactatgatttttatattatgtagaCAAATATGTTATCAAGGAATCATTTACATACAATTGAAAATGGGCTGAAAATATGCTTAACCTCAGGCCATTATGTGTTTCCATGGTTACTGTTGTAACCATTGTAAATATAGCGTTTCCATGGTTACTGCTGTAAACAAATGATGTGTTTCCATGGTTACTGCTGTAACAGTTGTGAACAAATCATAGTGTTTCCATGGTTACCGTTGTAAACAAATTATGTGTTTCCATGGTTACTGCTGTAACCGTTGTAAACGAATAATAGTGTTTCCGTGATTAACACTGTAAACAAATTATATGTGTCCATGGTTACCATTGTAAACAAAGGATGTCTTTCCATGATTACTGCTATAACTGTTGTAATCAAATCATAGCGTTTCCATGGTTACTGCAGTATTTCCATGGTTACGGCTGTAAACAAATTATGTGTTTCCATGGTTACTCCTATAACTGTTGTAAACAAATCATAGCGTTTCCATGGTAACTGTCGTGTTTCCATGGTTATGACTGTAAACCAATGATGTGTTTCCATGGTTACTCATATAATCGTTGTAAACAAATCATAGCGTTTCCATGGTTACTGCTGTAAACAAATGTGTTTCCATGGTTacttctgtaaataaatgatgtgtttCCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139252 lncRNA upstream 45241 15461373 ~ 15461752 (+) True G94110
TU139246 lncRNA upstream 53385 15434462 ~ 15453608 (+) True G94104
TU139242 lncRNA upstream 72825 15430298 ~ 15434168 (+) True G94101
TU139230 lncRNA upstream 177475 15324047 ~ 15329518 (+) True G94091
TU139226 lncRNA upstream 189176 15317612 ~ 15317817 (+) False LOC122356934
TU139296 lncRNA downstream 109306 15640257 ~ 15640660 (+) True G94144
TU139317 lncRNA downstream 170476 15701427 ~ 15706978 (+) True G94162
TU139318 lncRNA downstream 170476 15701427 ~ 15706978 (+) False G94162
TU139321 lncRNA downstream 176165 15707116 ~ 15710154 (+) True G94163
TU139332 lncRNA downstream 230741 15761692 ~ 15761967 (+) True G94173
XM_043256050.1 mRNA upstream 188816 15314814 ~ 15318177 (+) True LOC122356934
XM_043256048.1 mRNA upstream 192337 15295849 ~ 15314656 (+) True tarbp1
XM_043256049.1 mRNA upstream 199137 15295849 ~ 15307856 (+) False tarbp1
XM_043256260.1 mRNA upstream 211799 15279442 ~ 15295194 (+) True zgc:172136
XM_043256128.1 mRNA downstream 50917 15581868 ~ 15607881 (+) True golga7bb
XM_043254818.1 mRNA downstream 183242 15714193 ~ 15723743 (+) True slc25a28
XM_043255334.1 mRNA downstream 234003 15764954 ~ 15773545 (+) False got1
XM_043255333.1 mRNA downstream 235324 15766275 ~ 15773545 (+) True got1
XM_043254639.1 mRNA downstream 266482 15797433 ~ 15861462 (+) True hpse2
XR_006252400.1 other upstream 192714 15295849 ~ 15314279 (+) False tarbp1
XR_006252370.1 other upstream 231759 15255074 ~ 15275234 (+) False fam135a
XR_006252421.1 other upstream 280810 15106458 ~ 15226183 (+) True LOC122357077
XR_006252357.1 other upstream 1139858 14354116 ~ 14367135 (+) False frmd6
TU138522 other upstream 1597390 13739607 ~ 13909603 (+) True G93613
XR_006252368.1 other downstream 333888 15864839 ~ 15870625 (+) False hps1
XR_006252369.1 other downstream 333888 15864839 ~ 15869803 (+) False hps1
TU139358 other downstream 342493 15873444 ~ 15877422 (+) True G94186
TU139356 other downstream 343320 15874271 ~ 15876678 (+) False G94186
TU139427 other downstream 372995 15903946 ~ 15904349 (+) False nkx1.2la