RNA id: XR_006252327.1


Basic Information

Item Value
RNA id XR_006252327.1
length 703
lncRNA type intronic
GC content 0.35
exon number 2
gene id LOC122356489
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 1861471 ~ 1862276 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGGTCTCTGTGATCACAGCACCGCTAACCAGGAGAGATCACCCGGGGAGATTAAGATTATCAAAAGGACAGCGatacaaacaaatcaaacagaCGGGAAGCGGTTCATATCATGTGTTTCTCGATAATGGAAACGTAATCGCAAAGTTTTCCATTTTCAAATAGATCTTTTTTTCGTCGTCAGaaacaAGCTCTGTGATAAAATCAAAAGCcagaggaaacaaaaccccatccatacagaagggagaaaaaaaaccttggggtcagttctcctctgaccggacgcccagttttaaacacagctgtgtcagacagtgtaaatgacttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgaatgaataaaggttaaataaatatgcatacattgCAAAGGCTTTGAACACTTATGCATATGCTGGCATACTGTATAGTTTGTTACAgttattaacaattattattattattattatatgtacactgaagtcactgaatgtctttttatttgataaaaaatatcgAAATTAGATGATGCTTTtccaaaagatttatttttgactaCATGATCTtgaagagaaacacaaaacctTCACATTCAACATCCCAGTCGGACTAGACATGTTGTcctattttgaaaaaaaacttgCTAAAACTGTGtggtatattaaaaataaatgtgcttttattttaatata

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133243 lncRNA upstream 19363 1840335 ~ 1842108 (+) True mpc1
TU133236 lncRNA upstream 21812 1837979 ~ 1839659 (+) True G89997
TU133238 lncRNA upstream 21812 1838206 ~ 1839659 (+) False G89997
TU133178 lncRNA upstream 133320 1701578 ~ 1728151 (+) True G89957
TU133211 lncRNA upstream 145587 1711945 ~ 1715884 (+) True G89981
TU133250 lncRNA downstream 3871 1866147 ~ 1869613 (+) True G90006
TU133254 lncRNA downstream 9414 1871690 ~ 1871892 (+) True G90009
TU133256 lncRNA downstream 10939 1873215 ~ 1873444 (+) True G90011
TU133258 lncRNA downstream 12425 1874701 ~ 1877196 (+) True G90013
TU133264 lncRNA downstream 39340 1901616 ~ 1901893 (+) True G90015
XM_043255224.1 mRNA upstream 19589 1840336 ~ 1841882 (+) False mpc1
XM_043255213.1 mRNA upstream 43379 1815818 ~ 1818092 (+) True foxg1d
XM_043255816.1 mRNA upstream 91245 1768733 ~ 1770226 (+) True LOC122356760
XM_043255222.1 mRNA upstream 176292 1683250 ~ 1685179 (+) True prorsd1
XM_043255228.1 mRNA upstream 248141 1588526 ~ 1613330 (+) True LOC122356486
XM_043255184.1 mRNA downstream 128976 1991252 ~ 1997310 (+) True lgi1a
XM_043255204.1 mRNA downstream 177206 2039482 ~ 2046270 (+) True fbxo28
XM_043255209.1 mRNA downstream 192713 2054989 ~ 2059566 (+) True degs1
XM_043255112.1 mRNA downstream 213897 2076173 ~ 2094028 (+) True wu:fc17b08
XM_043255113.1 mRNA downstream 214574 2076850 ~ 2094028 (+) False wu:fc17b08
TU133244 other upstream 19363 1840335 ~ 1842108 (+) False mpc1
TU133118 other upstream 258780 1581358 ~ 1602691 (+) False LOC122356486
TU132991 other upstream 391336 1469405 ~ 1470135 (+) True G89846
TU132855 other upstream 721276 1139159 ~ 1140195 (+) True G89770
TU132765 other upstream 850292 1008285 ~ 1011179 (+) False comtd1
TU133255 other downstream 9908 1872184 ~ 1872591 (+) True G90010
XR_006252324.1 other downstream 291146 2153422 ~ 2166028 (+) True tp53bp2a
TU133396 other downstream 313877 2176153 ~ 2180739 (+) False cutc
TU133574 other downstream 607669 2469945 ~ 2470381 (+) True G90230
TU133786 other downstream 1120283 2982559 ~ 2984609 (+) False LOC122356072

Expression Profile