RNA id: XR_006252336.1


Basic Information

Item Value
RNA id XR_006252336.1
length 507
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC122356492
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2052031 ~ 2054891 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCTTCATCCAGAGCTCATCCAGAGCTTCATCCAGAGCTTCACCCAGAGCTTCATCCAGAGCTTCATCCAGAGCTTCACCGCTGACTTTCTTTCACAGCCTTTCAGCTGCAGGAAATAGACGAAAGCATGGAGTCTCTCTTGGCTGTTGTGACCAGTGGGCTCCTGGCTGTGGATGAACATTCATTCCTGCAAACCACGGAGTGGTGTCTGGTACATGCTGCGGAGATGAGGAATAGGAGTTTTGGATTGTATTTGGGGAAAACAGGGAATTAACCCGAGATACTGTAGTAACAACAGTTCCCAAACCCTGAACTCATTCTTCCACCTTCTCTCATCGTCAGTCCAACTCAAAGGACCTCAACTGATGAATCACCACAGTCATATCAAGCACAAAATGGGTTAATATGTACTTTTCTTCAAGACCATGTTGcgtgattcatttaaacaatctcatctgaaagggaaactcctacaaatgcCTATGCAATAAAATCAGAGGCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133360 lncRNA downstream 144493 1907316 ~ 1907538 (-) True G90078
TU133358 lncRNA downstream 164422 1887406 ~ 1887609 (-) True G90076
TU133356 lncRNA downstream 180299 1871381 ~ 1871732 (-) True G90074
TU133344 lncRNA downstream 272502 1778464 ~ 1779529 (-) True G90064
XR_006252333.1 lncRNA downstream 276111 1770312 ~ 1775920 (-) False LOC122356490
TU133475 lncRNA upstream 95426 2150317 ~ 2166300 (-) True G90166
TU133479 lncRNA upstream 97696 2152587 ~ 2155188 (-) True G90168
TU133496 lncRNA upstream 136020 2190911 ~ 2192963 (-) True G90180
TU133512 lncRNA upstream 159646 2214537 ~ 2214869 (-) True G90193
TU133513 lncRNA upstream 159646 2214537 ~ 2215301 (-) False G90193
XM_043255108.1 mRNA downstream 14920 2012695 ~ 2037111 (-) False heatr5b
XM_043255109.1 mRNA downstream 14932 2012695 ~ 2037099 (-) True heatr5b
XM_043255110.1 mRNA downstream 14952 2012695 ~ 2037079 (-) False heatr5b
XM_043255107.1 mRNA downstream 14952 2012695 ~ 2037079 (-) False heatr5b
XM_043255111.1 mRNA downstream 18006 2012695 ~ 2034025 (-) False heatr5b
XM_043255160.1 mRNA upstream 5409 2060300 ~ 2074778 (-) True nvl
XM_043255159.1 mRNA upstream 5410 2060301 ~ 2074774 (-) False nvl
XM_043255117.1 mRNA upstream 38584 2093475 ~ 2146596 (-) True slit1a
XM_043255230.1 mRNA upstream 384315 2439206 ~ 2457063 (-) True LOC122356487
XM_043255138.1 mRNA upstream 403989 2458880 ~ 2466266 (-) False LOC122356433
TU133318 other downstream 360096 1684449 ~ 1691935 (-) True LOC122356758
TU133116 other downstream 495028 1556169 ~ 1557003 (-) False LOC122356439
TU132509 other downstream 1874711 123194 ~ 177320 (-) True G89543
TU132495 other downstream 1984155 67327 ~ 67876 (-) True G89537
TU132489 other downstream 2003232 47522 ~ 48799 (-) False LOC122356184
TU133469 other upstream 96946 2151837 ~ 2245078 (-) True G90161
TU133689 other upstream 529305 2584196 ~ 2585331 (-) True G90304
TU133704 other upstream 571437 2626328 ~ 2627157 (-) True G90311
TU133931 other upstream 935527 2990418 ~ 3021862 (-) True G90445
XR_006252267.1 other upstream 2618075 4672966 ~ 4689168 (-) False LOC122356061

Expression Profile