RNA id: XR_006252378.1


Basic Information

Item Value
RNA id XR_006252378.1
length 2051
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC122356733
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10787586 ~ 10799864 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAAGGGGAGGGATGCAAACAGGGAAATGAGGAGagatgggttaaaaaaaaatcgaggAAATTAAAAGACAAGTGGAAAGGAAGCGGTACCACCAGCGGCCAGGCATCGTGGTATTTCTAAACTGTTCCTTTGATGCATTTGGGTGTACTGGAGAACGGGCAGCCTATTGAAGCATGGCAGACCACCTGAGAGTTGTTTTCTGGACTCTGGGAGGTCACCTGACACCAGTGCTCTGGAGAAGGTGCACCGCACTGGATTTCACATGAAAAGATCTCACAgctttggaatgacacaagaGTGAAATTCAATATGTGCAAAGCATTTTAGCCATCTTAGGAGTGAGGAGACGAATCATTTCTGTTCTGAATGGATGATTCAGAGCCAGAGGTGAATCATACAGGGGTTTGTTTGTATCTGTGCCTCTGATCCCCCTCTGATAGTCCCTACATCGCGCAACATCTGTCACGCCGCGTGCCACAATCGCTCACGTAGAGCTTTAGGTGATGCTGGGGTATGGTTATTCCTGCCACACGGTCCACATGGGCATCCCCAACGCCAGCGCTCATTAGCAGGCAGGTGGCGTTAGAGATTCGACTGGGGCCGAGACGAGGAATAGAACCTGGCAAAGCGGGTTGAACGTCCGCATCGGGTAATCCCCGCCAGATTGCCAGGATATCAGAAGTGACATCACAAAGCCAACAAAAATTAGCATCCCTAATGGTCTGCCAGGCCAAACATTATTCTTCATGATGAGAAGCAGTCATGCCTGCCCAGGGCTCCTGACGATTTGGCCAAAAGCAGTGGAGGCCCCTGAGCTCTCAGCTCCAGCCAAAACCAACAGGCACTATTCTCCAACCCATGAAGACCGGTTCTACTCTACTGACAAGGAAGTTCCTGAGGAAAATCCTTGATACGCTCCCATCATACGCCGCTGATGCCTTCAGATTCTAGAAGATCCTGACCTGAATGCAAAGGAAGAGGCTCTCACCTGGTGCTTGATAACCAGTGAAAAACACCTTGACTAGATTTAGAAGCTAAAACCGAGAAAGATCAATGAGAGGAGAGTGGGAGAGTGgcagatttaattaattactgcatattagaatgtttgTTTACAAAAGTGAACAGTTACAAGGGGCCTGAtggtaattaatttaaaacgtACTTCCCCCTGTCCCTGCCTCGCGTCTGCACTAGACGTGGTTGTTTCATGGCAGctgtGGTCAGGACGGTCTCTCGAGGTCCCCCCTCCAGGACAATGATGTATTTAAGTCCCCTAAGAGGTCAGATGGACTCTGTCCAGAACATCACCTGCAATCAATAGTGTTGGTAAACCAGGCTCAACTGAGTGGCCATGAAGACTCCCCTTATAAACACGCTCACAGAGAGGCCGGCATGGCCCATTGCTTTGCTAAAACCGCAACCaacatcctcacacacacacacacacacacacacacacacacacacacacgcaacacATGCCACCACTCTGAAAACAAGTGTTGatgacaaagagaagaaaaataacagcaccTCAGCGGTAAGTGGAGAGCCTCCAGGTGATGAAATCCTCTCTAAAGTGACACAAAATTGAAGCAAATTGACAGCCATGTGAATGTGTTTATAAATGCTAGTCTGTGGTACTGCTGTGGAGCAATGAGGACACTGGAGTGATAGTTGGGATTTATCTTATTTTACTGAAATCATTTAGTTTCATGAGataaatttatgaaataaaaactgttacattttttaaattaattaaatttattttatttgagttaacatttatttcattgagCTAGCTGCAACATGGGCCaaggcattatttatttttctttcttttattggtttaaataacttaaactaaaattaaaaatttaaaactaaatgaatattacaaaaattactaaaatgaaaatgaaaaatataaaaagctaattcagtatgtaaactattattattaaatctataatagtatatcaataatagtaaaatagcaAATTCATTATTCTTATTTCAATAGTGCATACATGTATACCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252397.1 lncRNA downstream 82 10784852 ~ 10787504 (-) True LOC122356898
TU137350 lncRNA downstream 2891 10784373 ~ 10784695 (-) True G92788
TU137346 lncRNA downstream 12087 10775195 ~ 10775499 (-) True G92784
TU137341 lncRNA downstream 24694 10762619 ~ 10762892 (-) True G92779
TU137183 lncRNA downstream 153020 10632250 ~ 10634566 (-) True c13h10orf53
TU137407 lncRNA upstream 145340 10945204 ~ 10947731 (-) True G92829
TU137414 lncRNA upstream 176669 10976533 ~ 10977459 (-) True G92836
TU137417 lncRNA upstream 186438 10986302 ~ 10986520 (-) True G92839
TU137418 lncRNA upstream 188550 10988414 ~ 10988695 (-) True G92840
TU137426 lncRNA upstream 189418 10989282 ~ 10991734 (-) False G92841
XM_043256242.1 mRNA downstream 85489 10669026 ~ 10702097 (-) False cdhr1a
XM_043256243.1 mRNA downstream 85489 10670310 ~ 10702097 (-) False cdhr1a
XM_043256245.1 mRNA downstream 107764 10669026 ~ 10679822 (-) True cdhr1a
XM_043254506.1 mRNA downstream 128677 10651830 ~ 10658909 (-) True rgra
XM_043255558.1 mRNA upstream 86940 10886804 ~ 10893952 (-) True hif1an
XM_043255947.1 mRNA upstream 98504 10898368 ~ 10905914 (-) True wnt8b
XM_043255949.1 mRNA upstream 106191 10906055 ~ 10911829 (-) True scdb
XM_043255948.1 mRNA upstream 106191 10906055 ~ 10911827 (-) False scdb
XM_043254603.1 mRNA upstream 113186 10913050 ~ 10914756 (-) True trmt2b
TU136940 other downstream 597076 10185761 ~ 10190510 (-) False LOC122356841
TU136576 other downstream 1672035 9115093 ~ 9115551 (-) True G92267
TU135889 other downstream 2739685 8043565 ~ 8047901 (-) True G91775
unassigned_transcript_1927 other downstream 3652444 7135072 ~ 7135142 (-) True trnag-gcc_69
unassigned_transcript_1925 other downstream 3656371 7131145 ~ 7131215 (-) True trnag-gcc_67
TU137394 other upstream 125080 10924944 ~ 10935331 (-) True G92819
XR_006252282.1 other upstream 401082 11200946 ~ 11218985 (-) False rassf4a
XR_006252349.1 other upstream 726316 11526180 ~ 11531309 (-) False zdhhc16a
XR_006252352.1 other upstream 971564 11771428 ~ 11799032 (-) False utp25
XR_006252291.1 other upstream 1629333 12429197 ~ 12430778 (-) False tmem234

Expression Profile